Tc03v2_t024860.1

Overview
NameTc03v2_t024860.1
Unique NameTc03v2_t024860.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1314
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productmitochondrial inner membrane protein OXA1, transcript variant X1
NoteMitochondrial inner membrane protein OXA1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606698
GenbankXM_018118340.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g024860Tc03v2_g024860Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p024860.1Tc03v2_p024860.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto193022auto193022Theobroma cacaoexon
exon-auto193023auto193023Theobroma cacaoexon
exon-auto193024auto193024Theobroma cacaoexon
exon-auto193025auto193025Theobroma cacaoexon
exon-auto193026auto193026Theobroma cacaoexon
exon-auto193027auto193027Theobroma cacaoexon
exon-auto193028auto193028Theobroma cacaoexon
exon-auto193029auto193029Theobroma cacaoexon
exon-auto193030auto193030Theobroma cacaoexon
exon-auto193031auto193031Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto193032auto193032Theobroma cacaoCDS
CDS-auto193033auto193033Theobroma cacaoCDS
CDS-auto193034auto193034Theobroma cacaoCDS
CDS-auto193035auto193035Theobroma cacaoCDS
CDS-auto193036auto193036Theobroma cacaoCDS
CDS-auto193037auto193037Theobroma cacaoCDS
CDS-auto193038auto193038Theobroma cacaoCDS
CDS-auto193039auto193039Theobroma cacaoCDS
CDS-auto193040auto193040Theobroma cacaoCDS
CDS-auto193041auto193041Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t024860.1 ID=Tc03v2_t024860.1|Name=Tc03v2_t024860.1|organism=Theobroma cacao|type=mRNA|length=1314bp
ATGGCTTTTTCGCGTAGCCTTTCCAATAGAGCAACCCTAATAGCTGGACG
ATATCGACCATCATTTGCGTACGTTCTCCATGAAGATGACCGTAAAAATC
AATCTTTAAACGAGTCCCAATCTCAAGAAAAACCCGGTAATTTTGTTCAA
CATAGATATTTTGGAACTGGGTTTAGTAATTCATCCTCAGGGTTTGGTGT
GTTGTTCCAAGATAGAATATGTTCCCAACTATCTTTGCATCCAAGCTCTG
GCATGTCTTTTTGTCGATATATGTCTACAACCATCGGTGGGGGGGCAGAT
ATGAGTGCAGCGGCTTCTGCTATTAATGGTGGTGGGGCAGATATGAGTGC
AGCGGCTTCTGCTGTTAATGAGGTTGCCATTGCTGCTGCTGATTCTTGGT
TTCTGGTTGCTGCCTTGCAGCATGTTATTGATACGGTTCATTCTTTTACT
GGCTTCCCCTGGTGGGCTTCCATAGTAGTGACAACCCTTTTGATTCGAGG
GGCAACTATTCCACTTCTGATAAATCAACTTAAAGCTACTTCAAAATTTA
CGCTATTGAGGCCACGCTTGGAGGAAATCAAGGAGCAGATGCAAAGCAAG
GGTATGGATCCCCTGACAGTAGCTGAAGGTCAAAAGGAAATGAAAAAGCT
TTTCAATGAATATGGTGTGACTCCGTTTAGTCCAATGAAAGGGCTGTTTA
TTCAGGGTCCCATCTTTATCAGCTTTTTCCTTGCTATTTCAAACATGGCT
GAGAAAGTGCCATCATTTAAGTGTGGTGGAGCGTATTGGTTTATGGATCT
TACTACTCCAGATGATTTATATATTCTTCCAGTTTTGACAGCCCTTAGTT
TTTTGATAACAGTGGAGTGCAACATGCAAGAAGGTATGGAAGGGAATCCG
GCTGCTGGAACTATAAAAAATGTCTCTAGGGTTTTAGCTGCTCTGACAAT
TCCATTTACCATGAGTTTCCCAAAGGCCATATTTTGTTATTGGATTACAT
CAAATTTGTTTTCCCTCACCTATGGACTAGTGCTCAAGGCTCCGGGGGTG
AAGAAGGCTTTAGGTGTTCCTGAAATACCTAAGCCACCACCAGGTGCTGC
ACAAAAGCCTTCTGTTGATCTGTTTGCAGCCCTCAAACAAGCTGTCAAAC
AAGGCAGACCAGCAACACAAGAATCTACCTCATTACCTGTTGAACCAGCG
AAAGTATCAAACCAAATAACATCCTCTTCTTCGGCTATCAGTCAGAGGCT
TAAAAGTTTAGAGAGACAAGTGAAAGGAAGGAAGAAAAACAAGAAGAGGA
ATAATCACAGATAA
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protein sequence of Tc03v2_p024860.1

>Tc03v2_p024860.1 ID=Tc03v2_p024860.1|Name=Tc03v2_p024860.1|organism=Theobroma cacao|type=polypeptide|length=438bp
MAFSRSLSNRATLIAGRYRPSFAYVLHEDDRKNQSLNESQSQEKPGNFVQ
HRYFGTGFSNSSSGFGVLFQDRICSQLSLHPSSGMSFCRYMSTTIGGGAD
MSAAASAINGGGADMSAAASAVNEVAIAAADSWFLVAALQHVIDTVHSFT
GFPWWASIVVTTLLIRGATIPLLINQLKATSKFTLLRPRLEEIKEQMQSK
GMDPLTVAEGQKEMKKLFNEYGVTPFSPMKGLFIQGPIFISFFLAISNMA
EKVPSFKCGGAYWFMDLTTPDDLYILPVLTALSFLITVECNMQEGMEGNP
AAGTIKNVSRVLAALTIPFTMSFPKAIFCYWITSNLFSLTYGLVLKAPGV
KKALGVPEIPKPPPGAAQKPSVDLFAALKQAVKQGRPATQESTSLPVEPA
KVSNQITSSSSAISQRLKSLERQVKGRKKNKKRNNHR*
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