Tc03v2_t024000.1

Overview
NameTc03v2_t024000.1
Unique NameTc03v2_t024000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2799
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productrespiratory burst oxidase homolog protein A
NoteRespiratory burst oxidase homolog protein A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606602
GenbankXM_007040304.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g024000Tc03v2_g024000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p024000.1Tc03v2_p024000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto191780auto191780Theobroma cacaoexon
exon-auto191781auto191781Theobroma cacaoexon
exon-auto191782auto191782Theobroma cacaoexon
exon-auto191783auto191783Theobroma cacaoexon
exon-auto191784auto191784Theobroma cacaoexon
exon-auto191785auto191785Theobroma cacaoexon
exon-auto191786auto191786Theobroma cacaoexon
exon-auto191787auto191787Theobroma cacaoexon
exon-auto191788auto191788Theobroma cacaoexon
exon-auto191789auto191789Theobroma cacaoexon
exon-auto191790auto191790Theobroma cacaoexon
exon-auto191791auto191791Theobroma cacaoexon
exon-auto191792auto191792Theobroma cacaoexon
exon-auto191793auto191793Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto191794auto191794Theobroma cacaoCDS
CDS-auto191795auto191795Theobroma cacaoCDS
CDS-auto191796auto191796Theobroma cacaoCDS
CDS-auto191797auto191797Theobroma cacaoCDS
CDS-auto191798auto191798Theobroma cacaoCDS
CDS-auto191799auto191799Theobroma cacaoCDS
CDS-auto191800auto191800Theobroma cacaoCDS
CDS-auto191801auto191801Theobroma cacaoCDS
CDS-auto191802auto191802Theobroma cacaoCDS
CDS-auto191803auto191803Theobroma cacaoCDS
CDS-auto191804auto191804Theobroma cacaoCDS
CDS-auto191805auto191805Theobroma cacaoCDS
CDS-auto191806auto191806Theobroma cacaoCDS
CDS-auto191807auto191807Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t024000.1 ID=Tc03v2_t024000.1|Name=Tc03v2_t024000.1|organism=Theobroma cacao|type=mRNA|length=2799bp
ATGAGAGGTGGTTCGTTACCGACGCACGAGAGGCGGTGGGCCTCAGACAC
CGTTCCCGCCAAAACGACTCTCAGTTCTACGACGTCGCCCGGGACTGATT
CTAACTCCGCCGAGGAGTTCGTCGAGGTCACCCTCGACCTCCAGGACGAT
GACACCATCATTCTCCGAAGCGTGGAGCCGGCCACCGTCATCAACGTCGA
TGACGGTGCCGAAACCCCTGTCTCCGCGCCAGCCTCCGCTTCAAGATCCC
CGATTATCAAGCGAAGCTCATCCAACAAACTGAGACAGTTTTCACAAGAA
CTAAAAGCCGAAGCCGTCGCCAAAGCCAAGCAGTTCTCACAAGAGTTAAA
AGCCGAACTACGCAAGTTTTCATGGGGCCACGGGCACGCAACTCAGACCG
TGACCGGATTCGACTCGGCTTTAGCCGCTCGTGCTTTGAGAAAGCAGCGA
GCTCAACTCGACCGGACTCGGTCCGGCGCTCAAAAAGCACTTCGCGGATT
ACGATTTATAAGTAACAATAAAACCAATGCATGGGAAGAAGTTCAAAACA
ATTTCGACAAACTCGCCAAAGACGGCTTTCTCTTTCGCTCCGATTTCGCA
CAATGCATAGGAATGAAGGACTCGAAGGAATTTGCATTGGAGATGTTCGA
TGCATTGAGTAGGCGCAGGAGATTAAAAGTCGAAAAAATTAGCAGAGACG
AACTTTATGAATATTGGTCTCAAATCACCGATCAAAGTTTTGATTCTCGC
CTCCAGATCTTCTTCGACATGGTGGACAAGAACGAAGATGGTAGAATCGC
CGAGGCTGAAGTAAAGGAGATTATCATGTTGAGTGCTTCAGCGAACAAGC
TATCAAGATTGAAGGAGCAGGCGGAAGAATACGCAGCTCTGATCATGGAA
GAGTTGGACCCCGAAAGACTTGGATACATTGAGCTATGGCAATTGGAGAC
ACTTCTCTTGCAAAAGGACACGTATCTGAGCTATAGTCAAGCCCTAAGCT
ACACGAGCCAAGCCCTGAGCCAAAACTTACAGGGATTAAGAAAGAAGAGC
AGAATCAGAAGAATGAGCGCTAAACTTTTATACTATTTGGAAGAAAATTG
GAAAAGGATATGGGTCGTGTCATTGTGGATTATGATTATGATAGGGCTGT
TTACTTGGAAGTTCTTTCAATATAAGCAGAAGAGTTCTTTCCAGGTTATG
GGTTACTGTCTCCTCACAGCCAAGGGAGCAGCTGAGACCCTCAAGTTTAA
CATGGCTCTTATCCTCTTGCCCGTGTGCAGAAACACCATTACTTGGCTCA
GGTCCACCAAGCTGGGTCTCTTTGTACCTTTTGACGATAATATCAACTTT
CACAAGACAATAGCTGCAGCGATTGTAATTGGAGTCATTCTCCATGCCGG
TAACCATCTTGCCTGTGATTTTCCGAAGCTTATCAATTCTTCTGCTAAAG
ACTATGAGGTCTTTCTAATCCATGACTTCGGAAGTCATAAGCCAACGTAT
ATAGACCTGATAAAAGGGGCTGAGGGCGTCACTGGAATTCTAATGGTCAT
CTGCATGACAATTGCATTTACGCTAGCAACAACATGGTTTAGGCGGAACC
TGATTAAGCTGCCCAAGCCCTTTGATAGAATCACTGGCTTCAATGCTTTT
TGGTACTCACATCACCTGTTTGTCATTGTCTACGTCTTGCTCGTCATCCA
CGGCGTATTCCTTTATCTTGTGCACATATGGTACCGTAAGACGACTTGGA
TGTACCTAGCTGTTCCAGTTTTGTTATATGCTGGAGAAAGGATCCTGAGA
TTCTTCCGTTCTGGTTCCTATACTGTCCGGATTTTGAAGGTGGCTATTTA
TCCAGGAGGTGTTCTCACATTACAAATGTCTAAGCCACCTCAATTTCGGT
ATAAGAGTGGACAGTACATGTTTGTCCAGTGCCCTGCTGTCTCTCCCTTT
GAATGGCATCCATTTTCCATCACCTCTGCTCCTGGTGATGATTACCTTAG
TGTTCATATCCGGCAACTTGGTGACTGGACCCAAGAGCTCAGACGGCTGT
TCTCAGAGGTTTGTGAACCTCCTGTAGCTGGGAAAAGTGGGCTTCTTAGG
GCTGATGAGACGACTAAGAAAAGTTTGCCGAAGCTCTTAATAGATGGGCC
GTATGGTGCCCCTGCACAAGACTATCACAAGTATGATGTCCTGTTACTCG
TGGGCCTTGGAATTGGTGCAACACCATTCATCAGTATTTTAAAAGATCTG
CTTAACAACATTGTCAAAATGGAGGAGCAGGCAGATTCGGTCTCAGATAC
CAGTAGGACATCGGACATAAGTATCGGGAGCAATGATTCAACCACTCCTA
ACAGAGTTTCACCAAAGCGAAAGAAAACTCTTAAGACGACTAATGCTTAT
TTCTATTGGGTAACCAGGGAGCAGGGTTCATTTGATTGGTTCAAAGGGGT
CATGAATGAAGTTGCAGAACTTGATCAAAGGGGTGTCATTGAAATGCACA
ACTATTTGACTAGCGTGTACGAGGAAGGAGATGCACGTTCAGCTCTCATC
ACCATGGTCCAAGCATTAAATCATGCCAAGAATGGAGTTGACATCGTTTC
TGGCACCAGGGTGCGGACCCATTTTGCAAGGCCTAAATGGAAGAACGTTC
TCTCTAAACTAAGTTCTAAGCACTGCAACGCAAGGATAGGAGTCTTTTAC
TGCGGGGCACCGGTTTTGGCTAAAGAACTCAGCAAACTCTGCTATGAGTT
CAACCAAAAAGGTTCCACTAAATTTGAATTCCACAAGGAGCATTTCTAA
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protein sequence of Tc03v2_p024000.1

>Tc03v2_p024000.1 ID=Tc03v2_p024000.1|Name=Tc03v2_p024000.1|organism=Theobroma cacao|type=polypeptide|length=933bp
MRGGSLPTHERRWASDTVPAKTTLSSTTSPGTDSNSAEEFVEVTLDLQDD
DTIILRSVEPATVINVDDGAETPVSAPASASRSPIIKRSSSNKLRQFSQE
LKAEAVAKAKQFSQELKAELRKFSWGHGHATQTVTGFDSALAARALRKQR
AQLDRTRSGAQKALRGLRFISNNKTNAWEEVQNNFDKLAKDGFLFRSDFA
QCIGMKDSKEFALEMFDALSRRRRLKVEKISRDELYEYWSQITDQSFDSR
LQIFFDMVDKNEDGRIAEAEVKEIIMLSASANKLSRLKEQAEEYAALIME
ELDPERLGYIELWQLETLLLQKDTYLSYSQALSYTSQALSQNLQGLRKKS
RIRRMSAKLLYYLEENWKRIWVVSLWIMIMIGLFTWKFFQYKQKSSFQVM
GYCLLTAKGAAETLKFNMALILLPVCRNTITWLRSTKLGLFVPFDDNINF
HKTIAAAIVIGVILHAGNHLACDFPKLINSSAKDYEVFLIHDFGSHKPTY
IDLIKGAEGVTGILMVICMTIAFTLATTWFRRNLIKLPKPFDRITGFNAF
WYSHHLFVIVYVLLVIHGVFLYLVHIWYRKTTWMYLAVPVLLYAGERILR
FFRSGSYTVRILKVAIYPGGVLTLQMSKPPQFRYKSGQYMFVQCPAVSPF
EWHPFSITSAPGDDYLSVHIRQLGDWTQELRRLFSEVCEPPVAGKSGLLR
ADETTKKSLPKLLIDGPYGAPAQDYHKYDVLLLVGLGIGATPFISILKDL
LNNIVKMEEQADSVSDTSRTSDISIGSNDSTTPNRVSPKRKKTLKTTNAY
FYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALI
TMVQALNHAKNGVDIVSGTRVRTHFARPKWKNVLSKLSSKHCNARIGVFY
CGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF*
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