Tc03v2_t023890.1

Overview
NameTc03v2_t023890.1
Unique NameTc03v2_t023890.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length717
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Product2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic
Note2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606591
GenbankXM_018118480.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g023890Tc03v2_g023890Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p023890.1Tc03v2_p023890.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto191511auto191511Theobroma cacaoexon
exon-auto191512auto191512Theobroma cacaoexon
exon-auto191513auto191513Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto191514auto191514Theobroma cacaoCDS
CDS-auto191515auto191515Theobroma cacaoCDS
CDS-auto191516auto191516Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t023890.1 ID=Tc03v2_t023890.1|Name=Tc03v2_t023890.1|organism=Theobroma cacao|type=mRNA|length=717bp
ATGGCCACTCACTTTTACAGTTGTTCTCCAATTCCAGCAAAACCCACCCC
CACTACGATCTCCAACAAGTCCATTTTGTTGCCTAATCCTCGTATCATAA
CCGCCAGGCATCATAATAACATCCTACAATCAGCATCATCATCTTCTTCA
GCTTTTACTCTTACAGCTTCAATTTCACCGGGTGCTACTTCGGTTGCAGT
CGATGGACCCACCACCTCCACGAAACCTTCCAAGTCTTTGCCGTTTAGAG
TGGGCCATGGCTTCGACCTTCATCGTTTGGAGCCTGGCTACCCTTTGATC
ATTGGTGGGATTGATATTCCTCATGATAGAGGCTGCGAGGCTCATTCGGA
TGGAGATGTGCTGCTTCATTGTGTTGTGGATGCAATACTGGGAGCTTTAG
GGCTTCCTGATATAGGGCAGATATTTCCTGACTCTGATCCCAAGTGGAAA
GGAGCTCCATCTTCTGTCTTTATCAAAGAAGCTGTGAGACTCATGCATGA
AGTAGGCTATGAGATTGGAAACTTAGATGCCACCTTAATTCTTCAAAGAC
CAAAATTAAGTCCACACAAGGAGGCTATCAAAGCCAACTTGTCTGAGCTG
CTGGGAGCCGACCCATCTGTTGTCAATCTTAAAGCAAAGACTCATGAGAA
GGTCGACAGTCTTGGTGAAAATCGAAGTATTGCAGCCCATACTGTGGTCC
TACTGATGAGGAAGTAA
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protein sequence of Tc03v2_p023890.1

>Tc03v2_p023890.1 ID=Tc03v2_p023890.1|Name=Tc03v2_p023890.1|organism=Theobroma cacao|type=polypeptide|length=239bp
MATHFYSCSPIPAKPTPTTISNKSILLPNPRIITARHHNNILQSASSSSS
AFTLTASISPGATSVAVDGPTTSTKPSKSLPFRVGHGFDLHRLEPGYPLI
IGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWK
GAPSSVFIKEAVRLMHEVGYEIGNLDATLILQRPKLSPHKEAIKANLSEL
LGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK*
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