Tc03v2_t023410.1

Overview
NameTc03v2_t023410.1
Unique NameTc03v2_t023410.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1605
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductGMP synthase [glutamine-hydrolyzing], transcript variant X1
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606529
GenbankXM_018118103.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g023410Tc03v2_g023410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p023410.1Tc03v2_p023410.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto190522auto190522Theobroma cacaoexon
exon-auto190523auto190523Theobroma cacaoexon
exon-auto190524auto190524Theobroma cacaoexon
exon-auto190525auto190525Theobroma cacaoexon
exon-auto190526auto190526Theobroma cacaoexon
exon-auto190527auto190527Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto190528auto190528Theobroma cacaoCDS
CDS-auto190529auto190529Theobroma cacaoCDS
CDS-auto190530auto190530Theobroma cacaoCDS
CDS-auto190531auto190531Theobroma cacaoCDS
CDS-auto190532auto190532Theobroma cacaoCDS
CDS-auto190533auto190533Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t023410.1 ID=Tc03v2_t023410.1|Name=Tc03v2_t023410.1|organism=Theobroma cacao|type=mRNA|length=1605bp
ATGGACCCAAAAGCCGTGAAATCCGACTTAGTCCTGATCCTAGACTTCGG
TTCCCAATACACCCATCTCATCACTCGCCGTATCCGCTCCCTCTCTATCT
TCTCCCTTTGCATCTCCGGCACTTCCCCTCTGTCCTCGATCACGTCCCTC
AACCCAAAAGTCGTTATCCTTTCCGGCGGACCACACTCGGTCCATTCCGA
TGATTCTCCTTCATTTGCTGATGGGTTCGTTAAGTGGGCCCTGTCCAATG
GGGTTTTTGTTCTGGGTATTTGTTATGGGCTTCAGTTACTTGTTCAGAGA
CTTGGTGGTGAAGTTAGGGTTGGGGAAAGGCAGGAGTATGGGAGGATGGA
GATTGAGGTTGAGAAAAGTTGTGGTCTTTTTGGTGGGAAGAGAGTTGGGG
ATAGGCAGGTTGTTTGGATGAGTCATGGGGATGAGGCTGCTAGGTTGCCT
AATGGGTTTCAAGTGGTGGCTAGGAGTCAGCAGGGGGCAGTGGCTGCGGT
TGAGGATCAGGAGAATAGGTTTTATGGGTTGCAGTATCATCCTGAGGTTA
CACATTCGCCAGAAGGGATGGAGACTCTAAGGAATTTCTTGTTTGATGTT
TGTGGAATGAATGCTGATTGGAAAATGGAAGATGTAATGGATGAAGAAAT
TAAGGTGATCAACAACACGGTGGGGCCTGATGATCATGTTATCTGTGCTT
TATCTGGAGGTGTTGATTCCACAGTTGCTGCAATGCTTGTTCACAGGGCC
ATTGGAGATAGACTTCACTGTGTTTTTGTGGACAATGGTTTATTAAGGTA
TAAGGAGAGAGAACGGGTGATGGAAACCTTTGAAAGGGATCTACATCTAC
CTGTTACTTGTGTTGATGCAACTAATCAATTTCTTAGTAAGCTAAAAGGG
GTTGTAGACCCTGAGATGAAAAGAAAGATAATTGGAAAAGAATTTATCTG
CATCTTTGATACTTTTGCTCAAGAATTGGAGCATAAATTAGGAAAGAAAC
CTGCTTTCTTGGTTCAAGGAACCTTGTACCCGGATGTGATTGAATCTTGT
CCTCCACCAGGAACTGGAAGAACCCACTCTCACACAATCAAAAGTCATCA
TAACGTTGGAGGTCTTCCCAAAGACATGAAATTAAAGCTCATTGAGCCAC
TTAAACTTCTATTCAAGGATGAGGTTCGCCAACTTGGGGGGATATTGAGA
GTTCCTGAGCTATTTTTAAAGCGCCACCCATTTCCTGGGCCTGGCCTTGC
AGTACGAATCTTGGGTGACGTAACTGAAGGCAATGCCTTAGATATTCTTC
GTCAGGTTGATGAAATTTTCATTCAGTCAATCAAGGATGCTGGCATTTAT
GACTCAATTTGGCAAGCCTTTGCTGTATTTTTGCCTGTAAAATCAGTTGG
AGTTCAAGGTGATCAAAGAACACATTCTCATGTTGTTGCTCTTCGAGCTG
TTACAAGTCAAGATGGAATGACAGCAGATTGGTACTATTTTGAACATGAG
TTCCTTGATGATGTGGCTCGAAAAATATGCAACAATGTTCGTGGTGTGAA
TCGTGTGGTTCAAGACATCACATCAAAGCCCCCATCAACAATTGAATGGG
AATAA
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protein sequence of Tc03v2_p023410.1

>Tc03v2_p023410.1 ID=Tc03v2_p023410.1|Name=Tc03v2_p023410.1|organism=Theobroma cacao|type=polypeptide|length=535bp
MDPKAVKSDLVLILDFGSQYTHLITRRIRSLSIFSLCISGTSPLSSITSL
NPKVVILSGGPHSVHSDDSPSFADGFVKWALSNGVFVLGICYGLQLLVQR
LGGEVRVGERQEYGRMEIEVEKSCGLFGGKRVGDRQVVWMSHGDEAARLP
NGFQVVARSQQGAVAAVEDQENRFYGLQYHPEVTHSPEGMETLRNFLFDV
CGMNADWKMEDVMDEEIKVINNTVGPDDHVICALSGGVDSTVAAMLVHRA
IGDRLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDATNQFLSKLKG
VVDPEMKRKIIGKEFICIFDTFAQELEHKLGKKPAFLVQGTLYPDVIESC
PPPGTGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGGILR
VPELFLKRHPFPGPGLAVRILGDVTEGNALDILRQVDEIFIQSIKDAGIY
DSIWQAFAVFLPVKSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHE
FLDDVARKICNNVRGVNRVVQDITSKPPSTIEWE*
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