Tc03v2_t022490.1

Overview
NameTc03v2_t022490.1
Unique NameTc03v2_t022490.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1398
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 17 ESTs, 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producthydroxymethylglutaryl-CoA synthase
NoteHydroxymethylglutaryl-CoA synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606438
GenbankXM_007040039.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g022490Tc03v2_g022490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p022490.1Tc03v2_p022490.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto188335auto188335Theobroma cacaoexon
exon-auto188336auto188336Theobroma cacaoexon
exon-auto188337auto188337Theobroma cacaoexon
exon-auto188338auto188338Theobroma cacaoexon
exon-auto188339auto188339Theobroma cacaoexon
exon-auto188340auto188340Theobroma cacaoexon
exon-auto188341auto188341Theobroma cacaoexon
exon-auto188342auto188342Theobroma cacaoexon
exon-auto188343auto188343Theobroma cacaoexon
exon-auto188344auto188344Theobroma cacaoexon
exon-auto188345auto188345Theobroma cacaoexon
exon-auto188346auto188346Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto188347auto188347Theobroma cacaoCDS
CDS-auto188348auto188348Theobroma cacaoCDS
CDS-auto188349auto188349Theobroma cacaoCDS
CDS-auto188350auto188350Theobroma cacaoCDS
CDS-auto188351auto188351Theobroma cacaoCDS
CDS-auto188352auto188352Theobroma cacaoCDS
CDS-auto188353auto188353Theobroma cacaoCDS
CDS-auto188354auto188354Theobroma cacaoCDS
CDS-auto188355auto188355Theobroma cacaoCDS
CDS-auto188356auto188356Theobroma cacaoCDS
CDS-auto188357auto188357Theobroma cacaoCDS
CDS-auto188358auto188358Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t022490.1 ID=Tc03v2_t022490.1|Name=Tc03v2_t022490.1|organism=Theobroma cacao|type=mRNA|length=1398bp
ATGGCAAAGAATGTGGGAATCCTTGCTATGGATATCTACTTCCCTCCTAC
CTGTGTTCGACAGGAAGCATTGGAGGCTCATGATGGCGCAAGCAAAGGAA
AATACACCATTGGACTTGGTCAAGATTGCATGGCCTTCTGTACGGAGGTG
GAAGATGTTATCTCAATGAGTTTGACAGTTGTTACTTCACTCCTTGAAAA
GTATAAGATTGACCCTAAACAAATTGGCCGTCTTGAAGTTGGCAGTGAGA
CTGTGATAGATAAGAGCAAATCCATTAAGACCTTCCTGATGCAAATCTTT
GAGAAATGTGGAAACACTGACATTGAAGGGGTCGACTCAACTAATGCATG
CTATGGAGGGACTGCAGCTTTACTCAACTGTGTCAATTGGGTGGAAAGTA
GTTCATGGGATGGACGATATGGTCTTGTTGTTTGTACTGACAGTGCGGTC
TATGCAGAAGGACCTGCCCGGCCTACTGGAGGAGCGGCTGCAATTGCTAT
GCTAGTAGGGCCTGATGCTCCTATTGCTTTTGAAAGCAAATTAAGGGGGA
GTCATATGTCTCATGTCTATGACTTTTATAAGCCCAACCTTGCTAGTGAA
TATCCGGTTGTTGATGGGAAACTTTCTCAGACATGCTATCTCATGGCTCT
TGATTCTTGCTATAAATATTTCTGTCACAAGTATGAGAAACTAGTGGGCA
AACAATTTTCCCTTTCTGATGCTGAGTATTTTGTATTCCATTCTCCATAT
AACAAGCTTGTGCAGAAAAGCTTTTCTCGTTTGTTGTTCAACGACTTCCT
GAGGAATGCCAGTTCTGTTGATGACATTGCTAAAGAAAAGTTGGGACCAT
TCTCAACTTTGACTGGTGATGAAAGCTACCAAAGCAGGGATCTTGAGAAG
GCATCCCAACAAGTTTCAAAGCCCCTCTATGATGCCAAGGTCCAACCAAC
CACTTTGATACCAAAGCAAGTTGGCAACATGTACACCGCGTCTCTTTATG
CTGCATTTGTATCCCTTATTCACAACAAACATAGTGAATTGGCTGGAAAG
CGGGTGATATTATTCTCGTATGGGAGTGGTCTGACAGCAACAATGTTTTC
ATTGCGACTCAATGAAGGTCAACATCCCTTTAGCCTATCGAACATTGCAA
CAGTGATGAATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCCACCT
GAGAAGTTTGTTGAGACTATGAAGCTCATGGAGCACAGGTATGGAGCCAA
GGACTTTGTGACAAGCAAGGACTGTAGCCTTTTGTCTCCCGGAACATACT
ACCTCACGGAAGTTGATTCCATGTACCGGAGATTCTATGCAAAGAAGGAT
GGGGACTTTACTGCCTGTGAGAATGGTTCTCTTTCCAATGGTCACTGA
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protein sequence of Tc03v2_p022490.1

>Tc03v2_p022490.1 ID=Tc03v2_p022490.1|Name=Tc03v2_p022490.1|organism=Theobroma cacao|type=polypeptide|length=466bp
MAKNVGILAMDIYFPPTCVRQEALEAHDGASKGKYTIGLGQDCMAFCTEV
EDVISMSLTVVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIF
EKCGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVCTDSAV
YAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSHMSHVYDFYKPNLASE
YPVVDGKLSQTCYLMALDSCYKYFCHKYEKLVGKQFSLSDAEYFVFHSPY
NKLVQKSFSRLLFNDFLRNASSVDDIAKEKLGPFSTLTGDESYQSRDLEK
ASQQVSKPLYDAKVQPTTLIPKQVGNMYTASLYAAFVSLIHNKHSELAGK
RVILFSYGSGLTATMFSLRLNEGQHPFSLSNIATVMNVAGKLKSRHEFPP
EKFVETMKLMEHRYGAKDFVTSKDCSLLSPGTYYLTEVDSMYRRFYAKKD
GDFTACENGSLSNGH*
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