Tc03v2_t022360.1

Overview
NameTc03v2_t022360.1
Unique NameTc03v2_t022360.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1455
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productprotein FIZZY-RELATED 2
NoteProtein FIZZY-RELATED 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606422
GenbankXM_007040016.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g022360Tc03v2_g022360Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p022360.1Tc03v2_p022360.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto188140auto188140Theobroma cacaoexon
exon-auto188141auto188141Theobroma cacaoexon
exon-auto188142auto188142Theobroma cacaoexon
exon-auto188143auto188143Theobroma cacaoexon
exon-auto188144auto188144Theobroma cacaoexon
exon-auto188145auto188145Theobroma cacaoexon
exon-auto188146auto188146Theobroma cacaoexon
exon-auto188147auto188147Theobroma cacaoexon
exon-auto188148auto188148Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto188149auto188149Theobroma cacaoCDS
CDS-auto188150auto188150Theobroma cacaoCDS
CDS-auto188151auto188151Theobroma cacaoCDS
CDS-auto188152auto188152Theobroma cacaoCDS
CDS-auto188153auto188153Theobroma cacaoCDS
CDS-auto188154auto188154Theobroma cacaoCDS
CDS-auto188155auto188155Theobroma cacaoCDS
CDS-auto188156auto188156Theobroma cacaoCDS
CDS-auto188157auto188157Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t022360.1 ID=Tc03v2_t022360.1|Name=Tc03v2_t022360.1|organism=Theobroma cacao|type=mRNA|length=1455bp
ATGGACGATCCTCCGATAAGCAATCAACGTAGCCAATCAGCTTCATCATC
AACTCCTCGTCTCAACCTTCCGTTGAGAATGTCCGACTCTTCCCTCCATC
TCGAAAACCTTCCGTCTCGGATAATGCACATCAACCGTATGATCAACTCC
AACTACAACCGCTCTCCGTCGCGCACAATTTACTCCGATAGGTTCATTCC
CAGCAGATCCGGATCCAATTTCGCCCTATTCGACATCTCAAATTCTCCTA
CATCGGCCGAAGGAAAAGAAGACGGTTCCGGTACTTATAACAGTCTTTTA
CGCGCCGCGCTTTTTGGACCCGAAACGCCCGATAAGAAGGATTCATCGGG
CCTTCCAGCTTGCCGGAACATTTTCCGGTACAAGACTGAAACTAAACGGT
CATTACACTCGCTTTCGCCTTTTGGCCTTGAGGAGTCGATCCCCGGGATC
AGCCATAGCCCCGTTAAAGCTCCCAGGAAGGTTCCTAGATCACCTTACAA
GGTTTTGGATGCACCTGCATTGCAAGATGATTTTTATTTGAATTTGGTGG
ATTGGTCTTCAAACAATGTGTTGGCCGTGGGGTTGGGGAATTGTGTTTAT
TTGTGGAATGCTTGTAGTAGTAAGGTTACGAAGTTGTGTGATTTGGGGAT
CGATGATAGTGTTTGTTCAGTTGGTTGGGCTCAACGTGGAACTCATCTTG
CAGTTGGAACTAGCAATGGGAAAGTTCAGATTTGGGATGCATCTCGCTGC
CGGACGGTAAGAACAATGGAGGGGCATCGATTACGTGTCGGGGCCTTAGC
TTGGAGCTCTTCCTTATTATCTTCTGGTAGTCGTGACAAGAGCATTCTTC
AAAGGGATATACGTGCTCAGGATGATTTTGTTAGTAAACTTTCTGGACAC
AAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAATCGTGAACTAGC
ATCAGGTGGAAATGACAACAAACTTTTTGTTTGGAATCAACATTCCACTC
AACCTGTATTGAAATACTGTGAGCATACTGCTGCTGTGAAAGCAATTGCA
TGGTCTCCCCATCTTCACGGGCTTCTTGCATCTGGAGGTGGTACGGCTGA
TCGATGTATTCGATTCTGGAATACAACCACTAACACACACTTGAGCTGCA
TGGACACTGGCAGTCAGGTATGCAATCTTGTGTGGTCAAAGAATGTCAAT
GAACTCGTCAGCACTCATGGATACTCTCAAAACCAGATAATTGTCTGGAG
ATACCCTACCATGTCAAAGCTGGCTACTCTTACGGGCCACACGTATAGAG
TTCTCTATCTGGCAATCTCGCCTGATGGACAGACGATAGTTACTGGGGCT
GGAGATGAGACACTAAGGTTTTGGAATGTGTTCCCTTCCCCTAAATCTCA
GAACACTGATAGCGAAATAGGAGCATCATCTTTTGGAAGAACCACAATTC
GGTAA
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protein sequence of Tc03v2_p022360.1

>Tc03v2_p022360.1 ID=Tc03v2_p022360.1|Name=Tc03v2_p022360.1|organism=Theobroma cacao|type=polypeptide|length=485bp
MDDPPISNQRSQSASSSTPRLNLPLRMSDSSLHLENLPSRIMHINRMINS
NYNRSPSRTIYSDRFIPSRSGSNFALFDISNSPTSAEGKEDGSGTYNSLL
RAALFGPETPDKKDSSGLPACRNIFRYKTETKRSLHSLSPFGLEESIPGI
SHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSNNVLAVGLGNCVY
LWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRC
RTVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFVSKLSGH
KSEVCGLKWSYDNRELASGGNDNKLFVWNQHSTQPVLKYCEHTAAVKAIA
WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN
ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGA
GDETLRFWNVFPSPKSQNTDSEIGASSFGRTTIR*
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