Tc03v2_t021710.1

Overview
NameTc03v2_t021710.1
Unique NameTc03v2_t021710.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2274
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
CommentThe sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
Productprimary amine oxidase
NotePrimary amine oxidase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606350
GenbankXM_018116870.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g021710Tc03v2_g021710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p021710.1Tc03v2_p021710.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto187001auto187001Theobroma cacaoexon
exon-auto187002auto187002Theobroma cacaoexon
exon-auto187003auto187003Theobroma cacaoexon
exon-auto187004auto187004Theobroma cacaoexon
exon-auto187005auto187005Theobroma cacaoexon
exon-auto187006auto187006Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto187007auto187007Theobroma cacaoCDS
CDS-auto187008auto187008Theobroma cacaoCDS
CDS-auto187009auto187009Theobroma cacaoCDS
CDS-auto187010auto187010Theobroma cacaoCDS
CDS-auto187011auto187011Theobroma cacaoCDS
CDS-auto187012auto187012Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t021710.1 ID=Tc03v2_t021710.1|Name=Tc03v2_t021710.1|organism=Theobroma cacao|type=mRNA|length=2274bp
ATGGACATAAATATATACGCCCTTGGAAAGCTCAATTGTCAATACTCGAA
ACCCATAAGCTCTCTCTCATACTCACTTCTCGGAAGGGAGATAATGGAGA
AAACCCCATGGCTTCATCTCTGTCTCATTTCATGCTTAATCTTATTCTTT
CTGGTGCGTTCTTGGTACCCTCCACGCAAACCAGAACTGCCTGATTGCTC
TCTGCATGCCCCATGGTGCACCTCTAAGAACCGAATTTTCTCCAACTCCA
AGGCGGGTTCAGCGTTACATACCCAAGTTCAAGAATCGACAGACCACTCA
GCCGAGAGCCCTCGACACCCACTAGACCCTCTTACTATACAGGAAATCAA
CAGGGTCCGGACCATCCTCTCGTCCTATGAGCCCTTTTCATCTACCTTCC
CTACTATTAACACCTTACTGCTTGATGAACCAGATAAGCTGCAGGTTATC
GGGTGGAGAAAAGGTGACCCACTTCCACCAAGAAAAGCAGCTGTTCTGGC
TCTGTTAAATGGCCAATCCCACGTGCTTTCAGTGGACTTGGATTCTAGCC
GTGTCACTGCCATGCCATCAAATCCAACCTCAGGGTATCCTATGCTATCC
ATGAACGATATTTTGGGTGCGTCCAAAGTGCCGTTTTCTAGTGCAGAATT
TAACAAATCCATGACCGCCCGAGGGATCTCTTTATCGAATTTGGTGTGCT
TGACGCCTTCAGCCGGCTGGTTTGGGCCTAAAGAAGATGGCAAAAGGGTC
ATAAGGGTCCAGTGCTACTCTGGTGAAGGCACGTCCAACTTCTACATGAG
GCCCATTGAAGGGCTCACGGTGACAGTGGACCTGGACAAAATGGAGGTGG
TGAAAATATATGATGCAGGCCGACGTATCCCTGTTCCGAAAAGTACCGAC
ACTGATTACCGGTATGCGGCTCAAGAGAAGCTACCAGAAATGGAGCCACT
AAACCCAATTTCCATAGAACAGCCCAAAGGGCCAAGCTTTAGAATTGAAG
ATGGGCATCCGGTTAAGTGGGCCAACTGGGTGTTCCACCTCAAGGCTGAC
CAACGAGCTGGTTTGGTGATTTCGCCAGCCATGGTGCGGGACTCGGAGAC
GGGTGAGCTCAGGAATGTGATGTACAAAGGGTTCTCTTCAGAATTGTTCG
TGCCGTACATGGACCTTGACGAGTCTTGGTATTTTAAGTCGTATATGGAC
GCTAGGGAGTTTGGGTTAGGGACAACAGCCCTTTCACTCGTGCCACTAAA
CGATTGTCCGAGGTACTCTTACTACATGGATGGGGTTTTTGCGGCCTCGG
ACGGCATGCCATTTGTTCAGCCGAGCATGATATGCCTCTTTGAGAGGCAT
GCCGGCGACATCAGTTGGCGGCATTCTGAAACCCAAGTTTTCGGTTTTCA
GATTAGGGAGGCGAGACCAAAAGTAACCCTTGTCGCTCGTATGGCAGCAT
CAGTGGGAAATTACGATTACATCTTCGATTGGGAGTTTCAAACAGATGGT
CTGATAAGGATTAAGGTTGGACTCTCGGGAATGCTGATGGTGAAAGGAAG
TCCTCATCAGAATGTATATCAGGTGCCTAATCAAGGTGACATGTCCGGTC
CTCTTATTTCGGAGAATGTTATTGGAGTAGTTCACGATCACTTCATTACC
TTCCACCTGGACATGGATATTGATGGGCCTAATAATTCGTTTGTGAATGT
TAATCTCGTGAAGGAAGAGAGTTTACCCGGAAAATCCCCTAGGAAGAGCT
ACTTGAAAGTTGAGAGAAAAACAGCGAAGACAGAAAAAGATGCACAAATT
AAGCTTAAGTTGTATGATCCATCAGAATTTCACATGATCAATCCTTCCAG
GAGGTCTAGGCTGGGAAATCCAACCGGATACAAACTTGTTCCTGGAGGAA
CTGCAGCTAGTTTGCTTGATGGTGACGATCCTCCACAACTCAGAAGTGCG
TTCACGAACAACCAGATATGGGTGACCCCCTTCAATAAGAGTGAACAATG
GGCTGGTGGGCTTCTAGTGTATCAGAGCAGGGGAGAGGACACTCTTGCTG
TGTGGTCTGAAAGGAATCGTCCTATTGAAAGTAAGGATATTGTGTTATGG
TACACCATGGGATTCCATCACATTCCATGCCAAGAAGATTTCCCTGTAAT
GCCAACAGTGACATCAGGCTTTGAGCTCAAGCCTGTCAATTTCTTCGAAA
GCAATCCAATTCTTCGAGCTGCCCCAGCCTTTGAGAAAGACTTAATTGTC
TGCCGGCCAGGTGCTTTCTCTTGA
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protein sequence of Tc03v2_p021710.1

>Tc03v2_p021710.1 ID=Tc03v2_p021710.1|Name=Tc03v2_p021710.1|organism=Theobroma cacao|type=polypeptide|length=758bp
MDINIYALGKLNCQYSKPISSLSYSLLGREIMEKTPWLHLCLISCLILFF
LVRSWYPPRKPELPDCSLHAPWCTSKNRIFSNSKAGSALHTQVQESTDHS
AESPRHPLDPLTIQEINRVRTILSSYEPFSSTFPTINTLLLDEPDKLQVI
GWRKGDPLPPRKAAVLALLNGQSHVLSVDLDSSRVTAMPSNPTSGYPMLS
MNDILGASKVPFSSAEFNKSMTARGISLSNLVCLTPSAGWFGPKEDGKRV
IRVQCYSGEGTSNFYMRPIEGLTVTVDLDKMEVVKIYDAGRRIPVPKSTD
TDYRYAAQEKLPEMEPLNPISIEQPKGPSFRIEDGHPVKWANWVFHLKAD
QRAGLVISPAMVRDSETGELRNVMYKGFSSELFVPYMDLDESWYFKSYMD
AREFGLGTTALSLVPLNDCPRYSYYMDGVFAASDGMPFVQPSMICLFERH
AGDISWRHSETQVFGFQIREARPKVTLVARMAASVGNYDYIFDWEFQTDG
LIRIKVGLSGMLMVKGSPHQNVYQVPNQGDMSGPLISENVIGVVHDHFIT
FHLDMDIDGPNNSFVNVNLVKEESLPGKSPRKSYLKVERKTAKTEKDAQI
KLKLYDPSEFHMINPSRRSRLGNPTGYKLVPGGTAASLLDGDDPPQLRSA
FTNNQIWVTPFNKSEQWAGGLLVYQSRGEDTLAVWSERNRPIESKDIVLW
YTMGFHHIPCQEDFPVMPTVTSGFELKPVNFFESNPILRAAPAFEKDLIV
CRPGAFS*
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