Tc03v2_t020890.1

Overview
NameTc03v2_t020890.1
Unique NameTc03v2_t020890.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1713
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productasparagine--tRNA ligase, chloroplastic/mitochondrial, transcript variant X1
NoteAsparagine--tRNA ligase, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606254
GenbankXM_007039771.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g020890Tc03v2_g020890Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p020890.1Tc03v2_p020890.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto185533auto185533Theobroma cacaoexon
exon-auto185534auto185534Theobroma cacaoexon
exon-auto185535auto185535Theobroma cacaoexon
exon-auto185536auto185536Theobroma cacaoexon
exon-auto185537auto185537Theobroma cacaoexon
exon-auto185538auto185538Theobroma cacaoexon
exon-auto185539auto185539Theobroma cacaoexon
exon-auto185540auto185540Theobroma cacaoexon
exon-auto185541auto185541Theobroma cacaoexon
exon-auto185542auto185542Theobroma cacaoexon
exon-auto185543auto185543Theobroma cacaoexon
exon-auto185544auto185544Theobroma cacaoexon
exon-auto185545auto185545Theobroma cacaoexon
exon-auto185546auto185546Theobroma cacaoexon
exon-auto185547auto185547Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto185548auto185548Theobroma cacaoCDS
CDS-auto185549auto185549Theobroma cacaoCDS
CDS-auto185550auto185550Theobroma cacaoCDS
CDS-auto185551auto185551Theobroma cacaoCDS
CDS-auto185552auto185552Theobroma cacaoCDS
CDS-auto185553auto185553Theobroma cacaoCDS
CDS-auto185554auto185554Theobroma cacaoCDS
CDS-auto185555auto185555Theobroma cacaoCDS
CDS-auto185556auto185556Theobroma cacaoCDS
CDS-auto185557auto185557Theobroma cacaoCDS
CDS-auto185558auto185558Theobroma cacaoCDS
CDS-auto185559auto185559Theobroma cacaoCDS
CDS-auto185560auto185560Theobroma cacaoCDS
CDS-auto185561auto185561Theobroma cacaoCDS
CDS-auto185562auto185562Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t020890.1 ID=Tc03v2_t020890.1|Name=Tc03v2_t020890.1|organism=Theobroma cacao|type=mRNA|length=1713bp
ATGGCGGCTGCTGCTGCTGCTTTAGCACCAGCCACTCCTCTCCGGTACAA
ACCCTACTCTACCCTCCGATTCCTTTCCTTCTATTCCAAAAACCTAACAA
CTCCTCGCCTTTCCCCGCCACTTCCTCGCCGACCATTCCAGTTTCACTCA
ACCGTTCCTCCGAAACGATGCTTTTGCTCCGTTGTTTCTGCAGCGCTACA
GTCCGGAGAAAGGACAAAAACGGAATTCCAGGAAAAGAAAGTTGGTGAAA
TGGGGAATACAGTAGGCGAGTTTAGGAAGAAGTTGAAAATCGCCGACATA
AAAGGAGGACCCGATGGAGGTTTGGATCGGGTCGGGCAGACTCTGGTGGT
TATGGGTTGGGTACGGACTCTCCGGGTTCAAAGCAGCGTTACATTCCTTG
AGGTAAATGATGGCTCATGCCTTTCAAACATGCAATGCGTGATGAATTCG
GATGCTGAAGGTTATGATCAGGTGGAATCTGGGTTGATTGCTACTGGTGC
ATCTATATGGGTACAAGGGACTTTGGTGGCTAGCCAAGGAGCAAAGCAGA
AAGTGGAATTGAAGGTTGACAAAGTTGTTGTGGTTGGACAAAGTGATCCT
TCCTATCCCATTCAAAAGAAAAAGGTCAGCCGAGAATTTTTGAGGACTAA
AGCTCATCTTCGTCCTAGAACAAACACATTTGGTGCGGTTGCACGAGTGA
GGAATGCTTTGGCTTATGCAACGCATAAATTTTTCCAGGAAAATGGTTTT
GTGTGGATCTCTAGTCCTATCATTACAGCTTCAGATTGTGAAGGAGCTGG
TGAACAGTTCTGTGTTACTACTTTGATTCCAAGCTCCAGGGAAGCCACTG
ATTCTCCTGTCCGAGCCATTCCAAATACAAAGGATGGATTAATTGATTGG
TCACAGGATTTTTTTGGCAAACCAGCATTCTTGACAGTTTCAGGTCAACT
TAATGCTGAAACATACGCTACTGCTCTTTCGGATGTGTATACATTTGGAC
CCACCTTTCGAGCAGAAAATTCGAACACAACTAGACACTTGGCTGAATTT
TGGATGATTGAACCAGAACTCGCTTTTGCTGATCTGAATGATGACACGGC
CTGTGCAACTGCATATCTCCAGTATGTAGTGAGACATGTGCTTGATAATT
GCAAGGAAGACATGGAATTTTTCAACACTTGGATTGAGAAAGGGATCATT
GATCGACTGAATGATGTGGCTGAGAAAGACTTTGTGCAGTTGCCATATAC
TGATGCAATTGAGCTTCTTCTAAAAGCAAAAAAGAAATTTGAATTTCCGT
TGAAATGGGGATGTGATTTGCAAAGTGAGCATGAACGTTACATAACTGAA
GAGGCATTTAATGGATGCCCTGTTATAATTAGGGATTATCCAAAGGAGAT
CAAGGCATTCTATATGCGGCAAAATGATGATGGGAGGACTGTAGCAGCGA
TGGATATGTTGGTACCTCGGGTTGGCGAGCTCATTGGTGGAAGCCAAAGA
GAAGAACGACTTGAGTATCTGGAAAATCGTTTAGATGAGCTGAAGCTTAG
TAAGGAGAGCTACTGGTGGTATCTTGATCTGCGTCGTTATGGTTCAGTTC
CTCATGCGGGCTTTGGACTTGGCTTTGAAAGACTTGTGCAGTTTGCCACT
GGAATTGAGAATATAAGAGATACAATACCGTTCCCAAGGACACCTGGTTC
AGCTGAATTTTAG
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protein sequence of Tc03v2_p020890.1

>Tc03v2_p020890.1 ID=Tc03v2_p020890.1|Name=Tc03v2_p020890.1|organism=Theobroma cacao|type=polypeptide|length=571bp
MAAAAAALAPATPLRYKPYSTLRFLSFYSKNLTTPRLSPPLPRRPFQFHS
TVPPKRCFCSVVSAALQSGERTKTEFQEKKVGEMGNTVGEFRKKLKIADI
KGGPDGGLDRVGQTLVVMGWVRTLRVQSSVTFLEVNDGSCLSNMQCVMNS
DAEGYDQVESGLIATGASIWVQGTLVASQGAKQKVELKVDKVVVVGQSDP
SYPIQKKKVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF
VWISSPIITASDCEGAGEQFCVTTLIPSSREATDSPVRAIPNTKDGLIDW
SQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTTRHLAEF
WMIEPELAFADLNDDTACATAYLQYVVRHVLDNCKEDMEFFNTWIEKGII
DRLNDVAEKDFVQLPYTDAIELLLKAKKKFEFPLKWGCDLQSEHERYITE
EAFNGCPVIIRDYPKEIKAFYMRQNDDGRTVAAMDMLVPRVGELIGGSQR
EERLEYLENRLDELKLSKESYWWYLDLRRYGSVPHAGFGLGFERLVQFAT
GIENIRDTIPFPRTPGSAEF*
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