Tc03v2_t020770.1

Overview
NameTc03v2_t020770.1
Unique NameTc03v2_t020770.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1116
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Product3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial, transcript variant X2
Note3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606241
GenbankXM_018117907.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g020770Tc03v2_g020770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p020770.1Tc03v2_p020770.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto185015auto185015Theobroma cacaoexon
exon-auto185016auto185016Theobroma cacaoexon
exon-auto185017auto185017Theobroma cacaoexon
exon-auto185018auto185018Theobroma cacaoexon
exon-auto185019auto185019Theobroma cacaoexon
exon-auto185020auto185020Theobroma cacaoexon
exon-auto185021auto185021Theobroma cacaoexon
exon-auto185022auto185022Theobroma cacaoexon
exon-auto185023auto185023Theobroma cacaoexon
exon-auto185024auto185024Theobroma cacaoexon
exon-auto185025auto185025Theobroma cacaoexon
exon-auto185026auto185026Theobroma cacaoexon
exon-auto185027auto185027Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto185028auto185028Theobroma cacaoCDS
CDS-auto185029auto185029Theobroma cacaoCDS
CDS-auto185030auto185030Theobroma cacaoCDS
CDS-auto185031auto185031Theobroma cacaoCDS
CDS-auto185032auto185032Theobroma cacaoCDS
CDS-auto185033auto185033Theobroma cacaoCDS
CDS-auto185034auto185034Theobroma cacaoCDS
CDS-auto185035auto185035Theobroma cacaoCDS
CDS-auto185036auto185036Theobroma cacaoCDS
CDS-auto185037auto185037Theobroma cacaoCDS
CDS-auto185038auto185038Theobroma cacaoCDS
CDS-auto185039auto185039Theobroma cacaoCDS
CDS-auto185040auto185040Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t020770.1 ID=Tc03v2_t020770.1|Name=Tc03v2_t020770.1|organism=Theobroma cacao|type=mRNA|length=1116bp
ATGCAAAGCTTCAAAATACTAAGTCCTTTTTTTAACAAGCACCGTCGTTT
TGCCTCGTTTACCAGAAGCCTGTGCTCACTCAACAGCTCTAGCCATTATG
ACAACTTGGGAATTTTTCTTAATAAATTATACAAATCCTGGGAAAGGGAC
CCTACAGTTGATCTTGTTGTAATCAAGGGAAACGGCAGGGCGTTCTGTTC
TGGGGGAGATGTCGTCCAGCTATATCAATTAATAAATGAAGGGAGAGTGG
AAGAATGTAAAGAATGTTTCAGGACATTTTACAGTTTCGTGTACCTTTTA
GGCACATATTTAAAGCCGCAGGTGGCTATCTTGGATGGCATTACAATGGG
AGGAGGTGCAGGGATTTCTGTTCATGGTTCATACCGTGTTGCGACAGATA
AGACTGTATTTGGTGTTCCTGAAGTTCTAATTGGTTTCCATCCCGATGCT
GGGGCTTCTTATTATCTCTCACGCCTGCCAGGTTATTTAGGAGAATATCT
GGCTCTAACCGGCGATACACTTACTGGAGAAGAAATGTTTGCTTGTGGAC
TTGCAACTCACTATTCACTGAGCACAAAGCTTCCTGTAATTGAAACGCAA
CTCAGTACATCAGCTAGGAAGGACTTTTCTGTTGTGGAAACTTTTCTGGC
TAGATATAGTCATCCCAGATCTCCAAATTCAAGTAGTGTTCTTCACAGGA
TGGAGATGCTAAACAAATGTTTTGGCCATGGCACGGTTGAGGAAATTATT
GCTGCTTTGGAGGTTGAAGCGGCTAGATCAAAAGACAAATGGTGTATTTC
AACCATGAAGAAACTAAGAGCGGCTCCACCTTTGAGCTTGAAGGTTTCCT
TAAGATCTGTAAGAGAAGGCAGATTCCAAACTCTGGAGCAATGTCTTGCC
CGGGAGTATCAGATGACACTTCAAGCTATCACTAGACAGATCTCTAATGA
CTTCTCTGAGGGAGTTCGGGCACGATTAGTGGATAAATGCTTTGCACCAA
AGTGGGATCCATCCTGTATGGAGAAAGTGTCTGAAGATATGGTTGACGCA
TACTTTTCTGCCCTTAGCGCGTATGAGCCTGAACTAGAGTTTGTATGTGA
ACTTCCGAGAAGCTAG
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protein sequence of Tc03v2_p020770.1

>Tc03v2_p020770.1 ID=Tc03v2_p020770.1|Name=Tc03v2_p020770.1|organism=Theobroma cacao|type=polypeptide|length=372bp
MQSFKILSPFFNKHRRFASFTRSLCSLNSSSHYDNLGIFLNKLYKSWERD
PTVDLVVIKGNGRAFCSGGDVVQLYQLINEGRVEECKECFRTFYSFVYLL
GTYLKPQVAILDGITMGGGAGISVHGSYRVATDKTVFGVPEVLIGFHPDA
GASYYLSRLPGYLGEYLALTGDTLTGEEMFACGLATHYSLSTKLPVIETQ
LSTSARKDFSVVETFLARYSHPRSPNSSSVLHRMEMLNKCFGHGTVEEII
AALEVEAARSKDKWCISTMKKLRAAPPLSLKVSLRSVREGRFQTLEQCLA
REYQMTLQAITRQISNDFSEGVRARLVDKCFAPKWDPSCMEKVSEDMVDA
YFSALSAYEPELEFVCELPRS*
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