Tc03v2_t020730.1

Overview
NameTc03v2_t020730.1
Unique NameTc03v2_t020730.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1335
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productphosphatidylserine decarboxylase proenzyme 1, mitochondrial
NotePhosphatidylserine decarboxylase proenzyme 1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606237
GenbankXM_018118282.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g020730Tc03v2_g020730Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p020730.1Tc03v2_p020730.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto184938auto184938Theobroma cacaoexon
exon-auto184939auto184939Theobroma cacaoexon
exon-auto184940auto184940Theobroma cacaoexon
exon-auto184941auto184941Theobroma cacaoexon
exon-auto184942auto184942Theobroma cacaoexon
exon-auto184943auto184943Theobroma cacaoexon
exon-auto184944auto184944Theobroma cacaoexon
exon-auto184945auto184945Theobroma cacaoexon
exon-auto184946auto184946Theobroma cacaoexon
exon-auto184947auto184947Theobroma cacaoexon
exon-auto184948auto184948Theobroma cacaoexon
exon-auto184949auto184949Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto184950auto184950Theobroma cacaoCDS
CDS-auto184951auto184951Theobroma cacaoCDS
CDS-auto184952auto184952Theobroma cacaoCDS
CDS-auto184953auto184953Theobroma cacaoCDS
CDS-auto184954auto184954Theobroma cacaoCDS
CDS-auto184955auto184955Theobroma cacaoCDS
CDS-auto184956auto184956Theobroma cacaoCDS
CDS-auto184957auto184957Theobroma cacaoCDS
CDS-auto184958auto184958Theobroma cacaoCDS
CDS-auto184959auto184959Theobroma cacaoCDS
CDS-auto184960auto184960Theobroma cacaoCDS
CDS-auto184961auto184961Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t020730.1 ID=Tc03v2_t020730.1|Name=Tc03v2_t020730.1|organism=Theobroma cacao|type=mRNA|length=1335bp
ATGAAATTTCGGTTGTCCCAACATGTTCCAATGTTCCCTCCCTATTCACA
CGCCGGCCATGTTCACATCCACCGCCGGTTCTTCTCTTGGTACGCCAAGC
AGTTTCCAACAACGTCGCAAGCTCGCGCTTCTGTCAGCGGCGGCAATAGC
GATTCTCAAGGTAACGCTTTTCTGTTGCCCGGTGCAACAGTGGCTACTCT
ACTCATGCTTGGGGCTCTTCATGCTCGACGGCTCTACGATGACAAGAAGG
TTGAAGATGCACGGGAGAAAGGGGTTGAATTTGAGTTCCAACCAGATGTA
AAAGCTGCATTTCTGAGAATGCTACCTTTGCGATCTATTTCTAGAGTGTG
GGGCTTCTTGACAAATGTGGAAATTCCAGTTTGGCTGCGTCCACATGTTT
ATAGAGCATGGGCTCGTGCGTTCCGCTCAAACCTAGAAGAAGCAGCTCTG
CCCCTCGACGAATATGCTTCTTTAAGGGATTTCTTTGTTCGCACCTTGAG
AGAAGGTTGCAGGCCTATTGACCCTGATCCTTATAGCCTGGTTAGTCCTG
TGGATGGTACTATTCTTAGATTTGGGGAGTTGAAGGGTGCAGGGGCTATG
ATTGAGCAAGTCAAAGGATTTTCCTACTCTGTTTCATCTCTTCTTGGTGC
TAGTTCTTTGCTTCCAATTATAGCTGAGGGCCATACCCAAGATGATAGCA
GTACAATTGAGCAGGAAAGCAGTCAGAGAGAAAAGAGTAAGAAGTCATGG
TGGCGAATTTCATTGGCTTCTCCTAAAGTCCGGGAAACTGTTTCTGCATG
TCCAATGAAAGGCCTCTATTACTGTGTAATATACTTGAAGCCAGGAGACT
ATCATCGCATACACTCACCAGTTGATTGGAATGTTCTTGTTCGACGGCAT
TTTGCAGGTCACCTTTTTCCTTTGAATGAACGTGCTACAAGAACAATTAG
GAATCTTTATGTCGAGAATGAAAGGGTTGTCCTTGAAGGTCTATGGCAAC
AAGGATATATGGCAGTTGCAGCAATTGGTGCAACAAATATTGGATCAATT
GAGCTTTTCATAGAACCAGAACTTCGGACAAACAGGCCAAGAAAAAAGTT
ATTACACTCAGGGCCTCCAGAAGAATGTGTGTATAAACCTGAAGGGGTTG
GTGTAATGCTAAAAAAGGGAGAAGAGGTGGCTGCTTTCAACATGGGATCA
ACAGTTGTGCTTGTTTTCCAAGCCCCCACATTGAAATCACCCAAGAACAG
TAATGCTTCAGAGTTCAGGTTTTCTATTAGACGTGGGGACAGAATTCGTG
TAGGAGAAGCAATGGGAAGATGGCATGATTCATGA
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protein sequence of Tc03v2_p020730.1

>Tc03v2_p020730.1 ID=Tc03v2_p020730.1|Name=Tc03v2_p020730.1|organism=Theobroma cacao|type=polypeptide|length=445bp
MKFRLSQHVPMFPPYSHAGHVHIHRRFFSWYAKQFPTTSQARASVSGGNS
DSQGNAFLLPGATVATLLMLGALHARRLYDDKKVEDAREKGVEFEFQPDV
KAAFLRMLPLRSISRVWGFLTNVEIPVWLRPHVYRAWARAFRSNLEEAAL
PLDEYASLRDFFVRTLREGCRPIDPDPYSLVSPVDGTILRFGELKGAGAM
IEQVKGFSYSVSSLLGASSLLPIIAEGHTQDDSSTIEQESSQREKSKKSW
WRISLASPKVRETVSACPMKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRH
FAGHLFPLNERATRTIRNLYVENERVVLEGLWQQGYMAVAAIGATNIGSI
ELFIEPELRTNRPRKKLLHSGPPEECVYKPEGVGVMLKKGEEVAAFNMGS
TVVLVFQAPTLKSPKNSNASEFRFSIRRGDRIRVGEAMGRWHDS*
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