Tc03v2_t019880.1

Overview
NameTc03v2_t019880.1
Unique NameTc03v2_t019880.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1560
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productphospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic
NotePhospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606149
GenbankXM_007039604.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g019880Tc03v2_g019880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p019880.1Tc03v2_p019880.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto182762auto182762Theobroma cacaoexon
exon-auto182763auto182763Theobroma cacaoexon
exon-auto182764auto182764Theobroma cacaoexon
exon-auto182765auto182765Theobroma cacaoexon
exon-auto182766auto182766Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto182767auto182767Theobroma cacaoCDS
CDS-auto182768auto182768Theobroma cacaoCDS
CDS-auto182769auto182769Theobroma cacaoCDS
CDS-auto182770auto182770Theobroma cacaoCDS
CDS-auto182771auto182771Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t019880.1 ID=Tc03v2_t019880.1|Name=Tc03v2_t019880.1|organism=Theobroma cacao|type=mRNA|length=1560bp
ATGGCGCTCGCACTCTCAGCCTCCGTTAATCTCACCGCCCCAAGACGCTC
TCTACTCGGTACCACCACCAGGTTCCCTCTCTCCCCTCCAATCCCGACCC
TCCACATCACCGAAACACCCAACCCCATCACTATCCCCTCCGTCTCCGCC
TCCTCTCCGCCTCCCTCTACCGATTATAACCAATGGTCTCTCGATTCATG
GAAGTCAAAACGGGCCCTCCAACTTCCTGAATACCCGGACGTGGACGAGC
TCGAGTTGGTACTTCAAACAATCGGGTCGTTCCCGCCGATTGTCTTCGCT
GGCGAGGCAAGAAAGCTGGAGGAGAAGCTGGCGAACGCCGCCGTCGGGAA
GGCGTTCCTTTTACAGGGCGGGGACTGTGCGGAGAGTTTTAAAGAATTCA
ATGCCAACAACATCAGAGACACTTTCAGAGTGCTTCTGCAGATGGGCATT
GTCCTCACTTTTGGTGCCCAAATACCCGTCATTGCGGTTGGAAGGATGGC
AGGGCAATTTGCAAAGCCAAGGTCAGAGCCATTTGAGATAAAAGATGGAG
TTCAGTTACCGAGTTATCGTGGAGATAACATAAATGGTGATGCTTTCGAT
GAGAAATCTAGAGTTCCCGACCCTCAAAGGTTGATCAGAGCTTATCTTCA
ATCTGTTGGTACATTGAATCTCCTTAGAGCATTTGCTACCGGTGGCTATG
CTGCTATGCAAAGAGTCTCGGAGTGGAATCTCGATTTTGTTAAACATAGT
GAACAGGGAGACAGGTACATGGAGCTTGCACAGAGAGTTGATGAAGCTTT
GGGATTTATGGCTGCGGCTGGGTTAACTGTTGATGACCCTGTAATGAACA
CATTTGACTTTTGGACATCCCATGAATGCCTTCACTTACCATATGAGCAA
GCCTTGACTAGAGAGGATTCAACGACTGGCCTGTATTATGACTGTTCTGC
TCACTTGCTTTGGGTAGGTGAGAGGACTCGGCAATTAGATGGAGCACATG
TTGAATTTCTCCGGGGCATATCCAATCCTCTCGGCATAAAGGTGAGTGAT
AAGATGGACCCAAAGGAACTTGTAAAATTGTGCGAAATTCTGAACCCTCG
GAACAAACCTGGAAGACTGATAATAATCACCCGAATGGGAGCGGAAAACA
TGAGGATAAAGCTTCCACATCTTATTAGGGCTGTGCGCCAGGCTGGGCTT
ATTGTCACCTGGGTAAGCGATCCCATGCATGGAAACACAATTAAGGCTCC
ATGTGGTCTCAAAACTCGTGGATTTGATGCAATCAGGGCTGAGTTGAGGG
CATTCTTTGATGTTCACGATCAAGAAGGGAGCTATCCTGGAGGAGTTCAT
CTGGAGATGACAGGGCAAAATGTGACAGAGTGCATCGGAGGGTCAAAGAC
TGTGACCTTTGATGACTTGAACTCTCGGTATCACACACATTGTGACCCTA
GGTTGAATGCATCACAGTCATTAGAGCTAGCCTTTGCCATATCAGAGAGG
TTGAGGAGGAAAAGGCTCAAGTCTGCTAATGAATTTCGCAGTGCTTACAG
ATTTAATTAA
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protein sequence of Tc03v2_p019880.1

>Tc03v2_p019880.1 ID=Tc03v2_p019880.1|Name=Tc03v2_p019880.1|organism=Theobroma cacao|type=polypeptide|length=520bp
MALALSASVNLTAPRRSLLGTTTRFPLSPPIPTLHITETPNPITIPSVSA
SSPPPSTDYNQWSLDSWKSKRALQLPEYPDVDELELVLQTIGSFPPIVFA
GEARKLEEKLANAAVGKAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGI
VLTFGAQIPVIAVGRMAGQFAKPRSEPFEIKDGVQLPSYRGDNINGDAFD
EKSRVPDPQRLIRAYLQSVGTLNLLRAFATGGYAAMQRVSEWNLDFVKHS
EQGDRYMELAQRVDEALGFMAAAGLTVDDPVMNTFDFWTSHECLHLPYEQ
ALTREDSTTGLYYDCSAHLLWVGERTRQLDGAHVEFLRGISNPLGIKVSD
KMDPKELVKLCEILNPRNKPGRLIIITRMGAENMRIKLPHLIRAVRQAGL
IVTWVSDPMHGNTIKAPCGLKTRGFDAIRAELRAFFDVHDQEGSYPGGVH
LEMTGQNVTECIGGSKTVTFDDLNSRYHTHCDPRLNASQSLELAFAISER
LRRKRLKSANEFRSAYRFN*
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