Tc03v2_t018910.1

Overview
NameTc03v2_t018910.1
Unique NameTc03v2_t018910.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1374
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductDNA-directed RNA polymerase I subunit rpa49
NoteDNA-directed RNA polymerase I subunit rpa49, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606036
GenbankXM_007039428.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g018910Tc03v2_g018910Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p018910.1Tc03v2_p018910.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto180461auto180461Theobroma cacaoexon
exon-auto180462auto180462Theobroma cacaoexon
exon-auto180463auto180463Theobroma cacaoexon
exon-auto180464auto180464Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto180465auto180465Theobroma cacaoCDS
CDS-auto180466auto180466Theobroma cacaoCDS
CDS-auto180467auto180467Theobroma cacaoCDS
CDS-auto180468auto180468Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t018910.1 ID=Tc03v2_t018910.1|Name=Tc03v2_t018910.1|organism=Theobroma cacao|type=mRNA|length=1374bp
ATGGAAGAACAAGAACCACCATCGACGAAATCGAGAAGCAAGAAGTCCAA
GAAGAGAAACAGAGAGGGGAAGCTCCAACAACCAATAGAACCGATGTCAC
AAAACCTTGGAGCAAAAAAGGAGAATTTCCAAGTCAAAATCCAACTTTTC
CAAGACCAACCAAACAAGATTCCACCTTTAGTTGCCTATTTCCCGTCTGG
CTACAATCCTTGCAAAACCGATCCACAAACCCGACAGGAGGAGGAAGAGG
AGGAAGAAGAAGAAGAAGGACCCGACAACAAAAGCAACCAACCAAGGGTC
AAGGTTTATAGAAACATGGCTCAAAGGAAGACTAATAGGCTGCAAGTTGT
GGTTAGCCCAAGTGGGTCTAATGTGGATTTTGTGGGCTCCAATTACAGTG
GTGAGGCAGCTGCTGCACAAGTTTGCAAGTACTCACTTGGTGTTCTTGAT
AGGGAGACCAGGACTCTCAAGATTATTCCTATTGCTTCTAATAAGATATT
TAGATTGGAACCAAGAGTTAGAAGCTCAGAGACTGCTAATAAGGATGTTT
CAAGTTCAGTTAAGAGTGAACTCACTACAGAAGACAAGGAGGACAAAATG
GGGGAGCTTACTGCACTCTATGGAACAAAGAAGGATAGAAAGAAGAGGAA
GGATCTTAATAATTTGAAGAAGGAAGTTGATCCTGAATCACAAAAATCTT
TAGACGAGAAGATTGAGCAAGTTGCCTTTAACAAGGAGGCTCTGGGAAAT
ACCAGTGCCCTTGTTGCTCGTAATATCCCTCCTCATGACTGTTCTGCTAC
TACACCCGTAGAAGCTTACCCATTGGACAAGATTATTCTCAAGGGAGACT
GGGAATTTCTTGGAGATATTTATGGGCTTTTGGAGGTGGGAGCAGAAGTA
GCAAGCAATGCTTATCCAACTTTTGTTTGCAACAGAATTAATAAATTGGA
AGGCATTCAGGATGAGACAGAGAAGAGGAAACTCTCGTGTGTTTTTTCAT
TTATCACTCATCTTGTGAAGTTCAACGATCAGTTCTCCATGGATCGTGTT
GCTTCTGCAAAGGGCCATAAGATCCCAAGCATTATACGCCAGAGGTTTTT
CACCATGTTTACTGATCCAGGGTTGAGAAAACCTTCCCGTGACCAAATTA
ACCTTCTGATTAGTTACGTCTTGGTGCTCACTTTACATGCTGATGGATTC
CGAACTGACCCATCAGATATAGCGAAGGATCTAAGAATGAGTTCAATAGG
TTTGAGACCTCATTTTGAGAATTTGGGGTGCAAACTTGTACGTGAGAACA
ACTCAATATTCACTACCCTTCCTGTTCCTCTAAAATTTCCTTCGGAGAAC
TTGAAGCGGCAGCGGAAACGGTAG
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protein sequence of Tc03v2_p018910.1

>Tc03v2_p018910.1 ID=Tc03v2_p018910.1|Name=Tc03v2_p018910.1|organism=Theobroma cacao|type=polypeptide|length=458bp
MEEQEPPSTKSRSKKSKKRNREGKLQQPIEPMSQNLGAKKENFQVKIQLF
QDQPNKIPPLVAYFPSGYNPCKTDPQTRQEEEEEEEEEEGPDNKSNQPRV
KVYRNMAQRKTNRLQVVVSPSGSNVDFVGSNYSGEAAAAQVCKYSLGVLD
RETRTLKIIPIASNKIFRLEPRVRSSETANKDVSSSVKSELTTEDKEDKM
GELTALYGTKKDRKKRKDLNNLKKEVDPESQKSLDEKIEQVAFNKEALGN
TSALVARNIPPHDCSATTPVEAYPLDKIILKGDWEFLGDIYGLLEVGAEV
ASNAYPTFVCNRINKLEGIQDETEKRKLSCVFSFITHLVKFNDQFSMDRV
ASAKGHKIPSIIRQRFFTMFTDPGLRKPSRDQINLLISYVLVLTLHADGF
RTDPSDIAKDLRMSSIGLRPHFENLGCKLVRENNSIFTTLPVPLKFPSEN
LKRQRKR*
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