Tc03v2_t018770.3

Overview
NameTc03v2_t018770.3
Unique NameTc03v2_t018770.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1410
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productuncharacterized protein At4g17910, transcript variant X1
NoteUncharacterized protein At4g17910
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606020
GenbankXM_007039407.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g018770Tc03v2_g018770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p018770.3Tc03v2_p018770.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto180199auto180199Theobroma cacaoexon
exon-auto180200auto180200Theobroma cacaoexon
exon-auto180201auto180201Theobroma cacaoexon
exon-auto180202auto180202Theobroma cacaoexon
exon-auto180203auto180203Theobroma cacaoexon
exon-auto180204auto180204Theobroma cacaoexon
exon-auto180205auto180205Theobroma cacaoexon
exon-auto180206auto180206Theobroma cacaoexon
exon-auto180207auto180207Theobroma cacaoexon
exon-auto180208auto180208Theobroma cacaoexon
exon-auto180209auto180209Theobroma cacaoexon
exon-auto180210auto180210Theobroma cacaoexon
exon-auto180211auto180211Theobroma cacaoexon
exon-auto180212auto180212Theobroma cacaoexon
exon-auto180213auto180213Theobroma cacaoexon
exon-auto180214auto180214Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto180215auto180215Theobroma cacaoCDS
CDS-auto180216auto180216Theobroma cacaoCDS
CDS-auto180217auto180217Theobroma cacaoCDS
CDS-auto180218auto180218Theobroma cacaoCDS
CDS-auto180219auto180219Theobroma cacaoCDS
CDS-auto180220auto180220Theobroma cacaoCDS
CDS-auto180221auto180221Theobroma cacaoCDS
CDS-auto180222auto180222Theobroma cacaoCDS
CDS-auto180223auto180223Theobroma cacaoCDS
CDS-auto180224auto180224Theobroma cacaoCDS
CDS-auto180225auto180225Theobroma cacaoCDS
CDS-auto180226auto180226Theobroma cacaoCDS
CDS-auto180227auto180227Theobroma cacaoCDS
CDS-auto180228auto180228Theobroma cacaoCDS
CDS-auto180229auto180229Theobroma cacaoCDS
CDS-auto180230auto180230Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t018770.3 ID=Tc03v2_t018770.3|Name=Tc03v2_t018770.3|organism=Theobroma cacao|type=mRNA|length=1410bp
ATGGATTCACTACCAAGATCTTTCAATGCCAACAAGCACCTCAAAGAACA
ATTCGTCAGCAATTTGACGGGATCGTCGATGCTAGAAATCTCCGCGCTTT
TGACCACTGTCCCTATTCTAGTACTTTTGCGGCCGTCCATCTGTTTTCAA
GCCCTAACTGATGGTGATACCAAAGAGACCTCTTTAAAGAAAAATGATAC
TGCAATCGTTGCTTTTAAGAATTTAAAGGCTTACCTAGCCACATTAGTTA
TGGATTCTGTCTTCATTGTTCTTCCCACACTTTTACTTTTCACTGTTCTA
GCTGAGTGGATATATGTATGGATGATTTTGTTATCGTTGTTGCTGATTTT
CGTTATTGCAGGCAAAAGATCTCCTCATTCGCCTTACTTGGAAGGACCTA
AATCTTTTAGGATGAGTATATCATCGTATAGGGTTGCTATGATGTTTGTT
ACATGCTTGTGTATCTTGGCTGTTGACTTCAGAATATTTCCTAGAGAATT
TGCTAAGACTGAGACTTATGGTACTAGCTTGATGGACCTTGGAGTTGGCT
CCTTTGTACTAGTGAATTCAATTGTTTCACGGCAAGCGCGAAATGTCTCA
TCATCAATGGATTGGTGGAAGGCAGCCCTTAAATCTACGAGTCCACTACT
ACTGCTAGGATTTGCTAGACTTGTTTCTACAATGAGTGTGGACTATCAGG
TACATGTGGGGGAATATGGAGTACACTGGAATTTCTTTTTCACACTTGCT
GGTGTATCTATCCTTACATCCACAGTAAATGTTCCCTCAAAATATTCTGG
AATTCTTGGTTCAGTAATTTTAGTTGGGTACCAAAGTTGGTTGAGCAGTG
GGTTAAATGTGTATCTTCTTTCTAACAAAAGGGGAATGGATATCATAAGC
AGAAACAAGGAGGGAATTTTTAGCATATTTGGATACTGGGGTATGTATCT
TATTGGTGTTCAGGTGGGCTACTACCTCTTCTTTGGAAATCATTCCTCTG
TCATGCTGAGAAGCAACAATGGAACACGAATTAGAGTCTGGCTTCTTTCT
ATTCTGTTTTGGATTCTAACTGTGCTTCTAGACAGGCATGTTGAAAGAAT
TTCACGTAGAATGTGCAACCTGCCTTATGTTACTTGGGTGCTGGCTCAAA
ATCTGCAGCTTTTAGCAATACTAATGCTTTCTGATTATGTCCCTGGGAGC
AAAATGTCAGCTCTTGAAAAGGCATTTGATCGGAATTTATTGGCTTCCTT
TCTGCTGGCTAATGTGCTCACAGGGCTGGTAAACTTGTTTGTGGATACGC
TGTTTGCCTCCTCAGTATCAGCTCTTCTAATCCTGATTTCCTATGCTTTG
ACTTTGTCTGTTGTCATGGGAATAGTAGATTTTTATGGTGTTAGGTTAAA
ATTTTGGTAG
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protein sequence of Tc03v2_p018770.3

>Tc03v2_p018770.3 ID=Tc03v2_p018770.3|Name=Tc03v2_p018770.3|organism=Theobroma cacao|type=polypeptide|length=470bp
MDSLPRSFNANKHLKEQFVSNLTGSSMLEISALLTTVPILVLLRPSICFQ
ALTDGDTKETSLKKNDTAIVAFKNLKAYLATLVMDSVFIVLPTLLLFTVL
AEWIYVWMILLSLLLIFVIAGKRSPHSPYLEGPKSFRMSISSYRVAMMFV
TCLCILAVDFRIFPREFAKTETYGTSLMDLGVGSFVLVNSIVSRQARNVS
SSMDWWKAALKSTSPLLLLGFARLVSTMSVDYQVHVGEYGVHWNFFFTLA
GVSILTSTVNVPSKYSGILGSVILVGYQSWLSSGLNVYLLSNKRGMDIIS
RNKEGIFSIFGYWGMYLIGVQVGYYLFFGNHSSVMLRSNNGTRIRVWLLS
ILFWILTVLLDRHVERISRRMCNLPYVTWVLAQNLQLLAILMLSDYVPGS
KMSALEKAFDRNLLASFLLANVLTGLVNLFVDTLFASSVSALLILISYAL
TLSVVMGIVDFYGVRLKFW*
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