Tc03v2_t016250.2

Overview
NameTc03v2_t016250.2
Unique NameTc03v2_t016250.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length5691
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productglutamate synthase 1 [NADH], chloroplastic, transcript variant X2
NoteGlutamate synthase [NADH], amyloplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605743
GenbankXM_018117360.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g016250Tc03v2_g016250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p016250.2Tc03v2_p016250.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto174889auto174889Theobroma cacaoexon
exon-auto174890auto174890Theobroma cacaoexon
exon-auto174891auto174891Theobroma cacaoexon
exon-auto174892auto174892Theobroma cacaoexon
exon-auto174893auto174893Theobroma cacaoexon
exon-auto174894auto174894Theobroma cacaoexon
exon-auto174895auto174895Theobroma cacaoexon
exon-auto174896auto174896Theobroma cacaoexon
exon-auto174897auto174897Theobroma cacaoexon
exon-auto174898auto174898Theobroma cacaoexon
exon-auto174899auto174899Theobroma cacaoexon
exon-auto174900auto174900Theobroma cacaoexon
exon-auto174901auto174901Theobroma cacaoexon
exon-auto174902auto174902Theobroma cacaoexon
exon-auto174903auto174903Theobroma cacaoexon
exon-auto174904auto174904Theobroma cacaoexon
exon-auto174905auto174905Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto174906auto174906Theobroma cacaoCDS
CDS-auto174907auto174907Theobroma cacaoCDS
CDS-auto174908auto174908Theobroma cacaoCDS
CDS-auto174909auto174909Theobroma cacaoCDS
CDS-auto174910auto174910Theobroma cacaoCDS
CDS-auto174911auto174911Theobroma cacaoCDS
CDS-auto174912auto174912Theobroma cacaoCDS
CDS-auto174913auto174913Theobroma cacaoCDS
CDS-auto174914auto174914Theobroma cacaoCDS
CDS-auto174915auto174915Theobroma cacaoCDS
CDS-auto174916auto174916Theobroma cacaoCDS
CDS-auto174917auto174917Theobroma cacaoCDS
CDS-auto174918auto174918Theobroma cacaoCDS
CDS-auto174919auto174919Theobroma cacaoCDS
CDS-auto174920auto174920Theobroma cacaoCDS
CDS-auto174921auto174921Theobroma cacaoCDS
CDS-auto174922auto174922Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t016250.2 ID=Tc03v2_t016250.2|Name=Tc03v2_t016250.2|organism=Theobroma cacao|type=mRNA|length=5691bp
ATGCTGGATTGGATGCTTTGGATACACTCTCGATTTTCAACAAATACATT
TCCTAGTTGGGATCGTGCCCAACCAATGCGTGTCTTGGGCCATAATGGGG
AGATTAATACACTCAGAGGCAATGTAAACTGGATGAAGGCACGTGAGGGA
TTATTAAAGTGCAAGGAGCTTGGGCTATCAAAGAATGAGATGAAAAAGCT
TCTGCCCATCGTGGATGCCAGTTCATCTGATTCAGGGGCTTTTGATGGTG
TTCTTGAGCTTCTGGTTCGAGCTGGTAGAAGTCTTCCAGAAGCAGTTATG
ATGATGATTCCAGAAGCTTGGCAAAATGACAAAAATATGGATCCTCATCG
GAAGGCCCTGTATGAGTATTTCTCAGCTCTAATGGAGCCATGGGATGGAC
CTGCCCTGATATCATTTACTGATGGTCGCTACCTTGGAGCTACATTGGAT
CGTAATGGACTCCGTCCTGGTCGGTTTTACGTTACACATAGTGGACAAGT
CATCATGGCCAGTGAGGTTGGTGTTGTGGATATTCCACCTGAAGATGTGC
TTAGAAAAGGAAGACTAAACCCTGGGATGATGCTTCTGGTAGATTTTGAG
AAGCATACTGTTGTCGATGACGATGCCTTGAAGCAACAATATTCACTTGC
TAGGCCTTATGGTGAATGGCTTGAGAGCCAAAAAATTGAACTCAACAACA
TAGTTGATTCAGTTCAAGAATCAGAGAGGGTCACTCCAGCAATAGCTGGA
GCGATTCCCGCTTCCAATGATGATGACAATATGGAGCACATGGGAATTCA
TGGTTTATTGGCTCCGTTGAAAGCTTTTGGCTACACTGTTGAGGCTTTGG
AGATGCTGCTCCTTCCCATGGCTAAAGATGGAACGGAGGCCCTGGGTTCA
ATGGGAAATGATACTCCTTTGGCAGTTATGTCCAATCGGGAGAAGCTTAC
TTTTGAATATTTCAAGCAAATGTTTGCTCAAGTCACTAATCCCCCGATCG
ACCCCATTCGAGAGAAAATAGTGACATCCATGGAATGCATGATTGGTCCA
GAAGGGGATCTAACGGAAACAACTGAAGAGCAATGTCATCGTCTTTCACT
GAAGGGGCCTCTTTTATCAGTTGAAGAGACAGAAGCAATTAAAAAGATGA
ACTACAGAGGTTGGCGTAGTAAGGTTCTTGACATAACTTATTCAAAGGAC
CGTGGGAGGAAGGGATTGGAGGAAACCTTGGACAGGATTTGTGCTGAAGC
ACGAGATGCAATTAAGGAAGGTTATACGTTATTGGTGCTTTCTGACAGAG
CCTTCTCGTCAAAGCGTGCTGCTGTAAGCTCCCTCTTGGCAGTTGGTGCT
GTTCATCACCATCTTGTTAAAAAACTTGAACGTACTCGAGTGGGATTGAT
AGTTGAATCTGCAGAGCCCCGTGAAGTGCACCATTTCTGCACACTGGTTG
GATTTGGTGCGGATGCTATATGCCCATACTTGGCCATAGAGGCCATTTGG
AGATTACAGGTAGATGGCAAGATCCCTCCAAAATCTAGTGGTGAGTTTTA
CTCAAAGCATGAGCTGGTTAAGAAGTATTTCAAGGCAAGCAACTATGGAA
TGATGAAGGTTCTTGCCAAAATGGGAATATCTACTTTGGCCTCATACAAG
GGTGCTCAGATCTTTGAAGCTCTGGGTCTTTCATCAGAAGTGATTGAGAA
GTGCTTTGCAGGAACTCCTAGCAGAGTTGAAGGAGCAACATTTGAGATGC
TAGCTCGTGATGCACTTCATTTGCATGAGTTAGCATTCCCTTCTCGGGCT
CTTGCTCCAGGAAGTGCAGAAGCTGTGGCACTGCCCAATCCTGGAGATTA
TCACTGGAGGAAAGGTGGTGAAGTACACCTGAATGATCCTCTTGCTATAG
CACAGCTGCAAGAAGCTGCTAGGAGCAATAGTGTTGCTGCATACAAGGAA
TATGCCAAACGTATTCATCAACTGAACAAATCCTGTAATCTGCGTGGGAT
GTTGAAGTTCAAAGAGGCAGGGGTGAAAATCCCATTGGATGAGGTGGAAC
CTGCCAGTGAAATTGTGAAACGGTTCTGTACTGGGGCCATGAGTTATGGA
TCTATATCATTGGAGGCACATAGTACGCTGGCTATTGCTATGAATAGAAT
AGGGGGGAAATCAAATACAGGTGAGGGAGGTGAGCAACCATCTCGTATGG
AACCTCTGCCTGATGGTTTGATGAATCCAAAAAGAAGTGCCATTAAGCAG
GTTGCGAGTGGGAGATTTGGAGTTTCAAGTTATTACCTTACAAATGCTGA
TGAATTACAGATAAAAATGGCTCAGGGTGCCAAGCCTGGTGAAGGAGGTG
AACTTCCTGGTCATAAGGTAATAGGAGATATTGCAGTCACCAGAAACTCT
ACAGCTGGTGTGGGACTTATCAGCCCACCTCCCCATCATGATATCTATTC
AATTGAAGACCTTGCGCAACTAATTCATGATCTTAAGAATTCCAATCCAT
CGGCTCGAATCAGTGTGAAGCTAGTATCTGAAGCTGGAGTGGGAGTAATT
GCTAGTGGAGTTGTCAAGGGGCATGCTGACCATGTCTTGATATCAGGTCA
TGATGGTGGTACCGGGGCCTCACGATGGACAGGCATAAAAAATGCTGGGC
TCCCATGGGAACTTGGTTTAGCTGAGACCCACCAAACTCTGGTTGCCAAT
GATCTTCGTGGCCGCACTGTTCTCCAGACTGATGGCCAACTTAAAACAGG
AAGAGATGTGGCCATTGCTGCACTTCTTGGTGCTGAAGAGTTTGGCTTCA
GCACGGCCCCTCTCATAACTCTGGGTTGCATCATGATGCGAAAATGCCAC
AAAAACACCTGCCCTGTTGGCATTGCTACTCAAGATCCGGTGCTTCGAGA
AAAATTTGCTGGAGAACCTGAACATGTCATTAACTTTTTCTTTATGCTTG
CCGAGGAGGTGAGAGAGATAATGTCTCAGCTTGGTTTCCGAACACTTAAT
GAGATGGTTGGCCGTTCCGATATGCTTGAAGTTGATAAGGAAGTCCTAAG
GAATAATGAGAAGCTTCAGAATATTGATCTCTCCTTATTACTCAGACCTG
CTGCTGACATTCGCCCTGAAGCTGCTCAATATTGTATTCAAAAACAGGAT
CATGGCTTGGATATGGCTTTGGACCAAAAGCTCATTAAACTATCTAAAGC
TGCTCTAGAGAAAGGTCTTCCTGTATACATTGAAACACCTATATGCAATG
TGAACCGTGCAGTTGGAACAATGCTTAGCCATGAAGTAACTAAGCGCTAT
CACTCGGCAGGGCTTCCTGCTGGTACCATCCATATCAAACTCTCAGGAAG
TGCAGGACAGAGCCTGGGCTCTTTCATGTGCCCTGGCATCATGCTGGAGC
TTGAAGGCGATAGCAATGACTACGTTGGTAAAGGATTATCAGGTGGCAAA
ATTGTTGTTTATCCTCCAAAAGGAAGCCGGTTTGATCCTAAAGAAAACAT
AGTAATTGGTAATGTGGCTCTCTATGGAGCTACTAGTGGGGAAGCATATT
TCAATGGAATGGCAGCAGAAAGATTTTGTGTTCGTAATTCGGGTGCCAAA
GCAGTTGTAGAAGGTGTTGGTGATCATGGTTGCGAGTACATGACAGGTGG
GACTGTTGTTGTGCTTGGGAAAACTGGGAGGAACTTTGCCGCAGGTATGA
GTGGTGGTATTGCATATGTGCTTGATGTGGATGGGAAATTTCAATCTCGG
TGCAATCCTGAGCTGGTAGACCTTGATAAAGTTGAAGAAGAGGAGGATAT
TATGACTCTTAAAATGATGATTCAGCAACATCAGCGTCATACAAACAGCC
AGTTAGCCAGAGAAGTACTTGCTGACTTTGAGAATCTTCTGCCCAAATTC
ATAAAAGTCTTCCCCAGGGATTACAAGCGCGTTCTAGCAAAGGTGAAAGA
AGAGGAAGCCTCTAAGGAGGCATTGGAACGTGCTGCAAAAGAAGCTGAGG
AGCGAGACGAAGCAGAGTTGGTGGAGAAAGATGCTTTCGAAGAGCTCAAG
AAGTTAGCAGCTAATTTGATGAATGAGGAATCAAGTCAGGAAGGAGAGGC
CAAACCAGTCAAGAGGCCTTCTCGGGTTTCTGATGCTGTGAAACATCGTG
GTTTTGTTGCTTATGAGCGTGAAGGCATCCAATACAGGAATCCTAATGTC
CGGATGAATGACTGGAAGGAGGTCATGGAGGAATCAAAACCTGGCCCACT
TTTAAAGACACAGTCTGCTCGCTGCATGGACTGTGGTACTCCTTTCTGCC
ATCAGGAGAACTCTGGATGCCCTCTTGGAAACAAAATACCTGAATTCAAT
GAGCTTGTGTATCAAAATAGGTGGCGTGAAGCACTAGATCGTCTTCTAGA
AACAAATAACTTTCCAGAGTTCACTGGCCGAGTGTGTCCTGCACCATGTG
AAGGGTCTTGTGTTCTGGGTATTATTGAGAATCCTGTGTCCATCAAAGGC
ATTGAATGTGCTATCATAGACAAGGCATTTGAGGAAGGGTGGATGGTGCC
ACGGCCTCCTCTCAAGAGAACAGGGAAAAGCATTGCTATTGTCGGAAGTG
GACCAGCTGGTTTGGCTGCTGCTGATCAGCTAAATAGAATGGGTCACTCC
GTGACTGTGTATGAGCGTGCTGATAGAATTGGAGGGCTTATGATGTATGG
AGTCCCTAACATGAAGGCTGACAAGGTTGATGTAGTTCAACGGCGGGTTA
ACCTTATGGCTGAGGAAGGAGTTAAATTCGTGGTCAATGCAAATGTTGGA
ATTGACCCTTCCTATTCCCTTGACCAGCTACGAGAGGAAAATGATGCCAT
TGTTTTGGCAGTTGGAGCCACAAAACCCAGGGACCTTCCTGTTCCAGGAC
GGAATTTATCTGGTGTTCATTTTGCAATGGAATTCCTTCATGCAAACAGT
AAAAGTTTGCTTGATAGTAATCTCCAAGATGGTAACTATATATCTGCTAA
GGGCAAGAAAGTAGTGGTCATTGGTGGTGGTGACACTGGTACAGATTGCA
TAGGGACATCTATCCGCCATGGGTGTAGTAGCATTGTAAATCTTGAGTTA
CTTCCTCAGCCACCACGAACTAGAGCTCCTGGCAATCCTTGGCCACAGTG
GCCTCGCATATTCCGTGTAGACTATGGACACCAAGAGGCTGCTGCCAAAT
TTGGTAAAGACCCAAGATCCTATGAAGTTTTGACTAAGAGATTTGTGGGA
GATGAGAATGGAACTTTGAAAGGACTTGAGGTGGTACGAGTGCGTTGGGA
AAAAGATGCCAGTGGGAAGTTCCAGTTCAAAGAAGTTGAGGGTTCCGTGG
AAATAATTGAGGCTGACTTAGTCCTGCTAGCCATGGGGTTCCTAGGGCCT
GAGTCGACGGTGGCAGACAAGTTAGGTTTGGAGCAAGACAACCGATCAAA
CTTCAAGGCAGAGTATGGTCGCTTTGCAACCAATGTGAATGGAGTCTTTG
CTGCTGGAGATTGTCGCCGTGGTCAGTCATTAGTTGTGTGGGCAATCTCA
GAGGGAAGGCAAGCTGCTGCACAAGTTGACAAATACCTGACTAGGAAAGA
TGAGGACGTAAGTGTTGATGGCGAGAGCCAGAAAGATCTTGTCAAGAGAC
ATGAAGACCTTGCTCAGAGGCAGCAAACAGTAATGACATAA
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protein sequence of Tc03v2_p016250.2

>Tc03v2_p016250.2 ID=Tc03v2_p016250.2|Name=Tc03v2_p016250.2|organism=Theobroma cacao|type=polypeptide|length=1897bp
MLDWMLWIHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREG
LLKCKELGLSKNEMKKLLPIVDASSSDSGAFDGVLELLVRAGRSLPEAVM
MMIPEAWQNDKNMDPHRKALYEYFSALMEPWDGPALISFTDGRYLGATLD
RNGLRPGRFYVTHSGQVIMASEVGVVDIPPEDVLRKGRLNPGMMLLVDFE
KHTVVDDDALKQQYSLARPYGEWLESQKIELNNIVDSVQESERVTPAIAG
AIPASNDDDNMEHMGIHGLLAPLKAFGYTVEALEMLLLPMAKDGTEALGS
MGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGP
EGDLTETTEEQCHRLSLKGPLLSVEETEAIKKMNYRGWRSKVLDITYSKD
RGRKGLEETLDRICAEARDAIKEGYTLLVLSDRAFSSKRAAVSSLLAVGA
VHHHLVKKLERTRVGLIVESAEPREVHHFCTLVGFGADAICPYLAIEAIW
RLQVDGKIPPKSSGEFYSKHELVKKYFKASNYGMMKVLAKMGISTLASYK
GAQIFEALGLSSEVIEKCFAGTPSRVEGATFEMLARDALHLHELAFPSRA
LAPGSAEAVALPNPGDYHWRKGGEVHLNDPLAIAQLQEAARSNSVAAYKE
YAKRIHQLNKSCNLRGMLKFKEAGVKIPLDEVEPASEIVKRFCTGAMSYG
SISLEAHSTLAIAMNRIGGKSNTGEGGEQPSRMEPLPDGLMNPKRSAIKQ
VASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNS
TAGVGLISPPPHHDIYSIEDLAQLIHDLKNSNPSARISVKLVSEAGVGVI
ASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVAN
DLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCH
KNTCPVGIATQDPVLREKFAGEPEHVINFFFMLAEEVREIMSQLGFRTLN
EMVGRSDMLEVDKEVLRNNEKLQNIDLSLLLRPAADIRPEAAQYCIQKQD
HGLDMALDQKLIKLSKAALEKGLPVYIETPICNVNRAVGTMLSHEVTKRY
HSAGLPAGTIHIKLSGSAGQSLGSFMCPGIMLELEGDSNDYVGKGLSGGK
IVVYPPKGSRFDPKENIVIGNVALYGATSGEAYFNGMAAERFCVRNSGAK
AVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLDVDGKFQSR
CNPELVDLDKVEEEEDIMTLKMMIQQHQRHTNSQLAREVLADFENLLPKF
IKVFPRDYKRVLAKVKEEEASKEALERAAKEAEERDEAELVEKDAFEELK
KLAANLMNEESSQEGEAKPVKRPSRVSDAVKHRGFVAYEREGIQYRNPNV
RMNDWKEVMEESKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFN
ELVYQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKG
IECAIIDKAFEEGWMVPRPPLKRTGKSIAIVGSGPAGLAAADQLNRMGHS
VTVYERADRIGGLMMYGVPNMKADKVDVVQRRVNLMAEEGVKFVVNANVG
IDPSYSLDQLREENDAIVLAVGATKPRDLPVPGRNLSGVHFAMEFLHANS
KSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSSIVNLEL
LPQPPRTRAPGNPWPQWPRIFRVDYGHQEAAAKFGKDPRSYEVLTKRFVG
DENGTLKGLEVVRVRWEKDASGKFQFKEVEGSVEIIEADLVLLAMGFLGP
ESTVADKLGLEQDNRSNFKAEYGRFATNVNGVFAAGDCRRGQSLVVWAIS
EGRQAAAQVDKYLTRKDEDVSVDGESQKDLVKRHEDLAQRQQTVMT*
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