Tc03v2_t014780.1

Overview
NameTc03v2_t014780.1
Unique NameTc03v2_t014780.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1572
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ProductDNA-directed RNA polymerase III subunit RPC3
NoteRNA polymerase III subunit RPC82 family protein, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605573
GenbankXM_007038642.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g014780Tc03v2_g014780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p014780.1Tc03v2_p014780.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto171169auto171169Theobroma cacaoexon
exon-auto171170auto171170Theobroma cacaoexon
exon-auto171171auto171171Theobroma cacaoexon
exon-auto171172auto171172Theobroma cacaoexon
exon-auto171173auto171173Theobroma cacaoexon
exon-auto171174auto171174Theobroma cacaoexon
exon-auto171175auto171175Theobroma cacaoexon
exon-auto171176auto171176Theobroma cacaoexon
exon-auto171177auto171177Theobroma cacaoexon
exon-auto171178auto171178Theobroma cacaoexon
exon-auto171179auto171179Theobroma cacaoexon
exon-auto171180auto171180Theobroma cacaoexon
exon-auto171181auto171181Theobroma cacaoexon
exon-auto171182auto171182Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto171183auto171183Theobroma cacaoCDS
CDS-auto171184auto171184Theobroma cacaoCDS
CDS-auto171185auto171185Theobroma cacaoCDS
CDS-auto171186auto171186Theobroma cacaoCDS
CDS-auto171187auto171187Theobroma cacaoCDS
CDS-auto171188auto171188Theobroma cacaoCDS
CDS-auto171189auto171189Theobroma cacaoCDS
CDS-auto171190auto171190Theobroma cacaoCDS
CDS-auto171191auto171191Theobroma cacaoCDS
CDS-auto171192auto171192Theobroma cacaoCDS
CDS-auto171193auto171193Theobroma cacaoCDS
CDS-auto171194auto171194Theobroma cacaoCDS
CDS-auto171195auto171195Theobroma cacaoCDS
CDS-auto171196auto171196Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t014780.1 ID=Tc03v2_t014780.1|Name=Tc03v2_t014780.1|organism=Theobroma cacao|type=mRNA|length=1572bp
ATGGTGACTCAGCACGGCATCAAATACGCCGTCCATCTAATCACCACTCA
CTTCGGCGATCTCGTCGCCAAAGTTTGTGAGTGTCTCCTCCGGAAAGGAC
CGTTAACTCTCCAAGCCATAGTCCGGTTCACGGAGCTCACCTCTTCTCAA
GTCAAAAACAGTTTGCTTGTCTTGATTCAACACAATTGCGTTCAAGCTTT
TATTCTCGAACAGCTTGGCAGTCATGGAGATGGAGCAAAACTTAACACTC
AGTACATAGCATTGTTCAATAACATAATCCATCGTTGGAGGTTTCCCAAA
TTCTTGACTATTGTCTCCCAGAAACTTGATAAACAATGTGTTGAACTTTT
CGAGGCTTTGCTTTTGCATGGAAGGCTTACCCTCAAGCAAATGTCTGATC
GAGCAAAATCAGCTCAAAATGAAGGAGATGATGTAATTTTAGATGCTGTA
CGAGAAGCCTTTATTAAGTTACTGAATGCTCATTTTGTTGAACGATGCCC
TGCTGCTGAGTCTGTTCTGACAAAACCAACTGAAGAAGAGACTTCCGCAA
GGAAGCGAGTTCCTAAGTCTGCCAAGATACTTGAAGGAAAAGAAACATTA
GAGCAACGTGTTTTGGAAGCTGCCACACCTTCTGAAGCATTAAGATTTTT
GCTTGTAACACGAACTGAACCTGCTGCTGATGGAGGGAAGGATGAGAACA
ATTCCTCTAACATGACAGTTGGCAAGAAGCGCAAGCTTGATGCTTTAGAG
TCAGAGACAGAAGGTGAGGCTACAGATGAACAAGTAGTTCTTTGGCGTGC
TAACTTTGAGGAATTTATACGTCGTCTTAGGCATAAGGCTTTCATCGAGA
ATGTGAGGGCATGCCTGGATGATGGAGCTGTTATTGTCATAAGTGCGATG
CTGGAAGCAACTAGAACTGCAGAGAAGAAAGTTAAAACAGAGAATTCAGT
TCCCTTGTCACTCAATTCCATTTATGAAGAGGTGATAAAGAGTGAAGAAG
GCCGTAATATAACCTTTGATCGTGTGAGAGCCTCCCTTGTTCAGTTGAGT
TGTCCACCCTTCGTAAAAGCAGTCAATGAGTCGTACAGTATTGATTTCAA
GAAAATAATTGAACTAGCTCAGAATGATGAGGTGGAATCTATTGTGTTGA
AAAGATACGGAAGGGATGCATATAGAATGTTTCGGTTGCTATCAAGCACT
GCTCGCTTACTTGAGACTGATAAGATTGCAGATACTGCATTTGTTGAAAA
GAAGGACACAACAAAAATTCTTTATAAGCTGTGGAAAGATGATTATTTGC
ATATGGAGAAATTACAACTAACAGGAGCTAGACAATCACAGTTCTTGCTG
TGGAAAGTGAATAAGAACACTCTCTGGGAGCATGTACTAGATGAGATGTT
CCATGCTGCCTTAAATTTGAGCCTACGAGTGGCTCATGAGTTGGAACAAG
AAAAGGAGCTTTTGAATCTCCCTCAAGATAAGCGCGTTAACCGACTAAGA
AAAGTCAGGTTACTCTTGGAATCATCACAGATGAAACTTGACGATGCTAT
CATGCTTTTCCATGACTTCTGA
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protein sequence of Tc03v2_p014780.1

>Tc03v2_p014780.1 ID=Tc03v2_p014780.1|Name=Tc03v2_p014780.1|organism=Theobroma cacao|type=polypeptide|length=524bp
MVTQHGIKYAVHLITTHFGDLVAKVCECLLRKGPLTLQAIVRFTELTSSQ
VKNSLLVLIQHNCVQAFILEQLGSHGDGAKLNTQYIALFNNIIHRWRFPK
FLTIVSQKLDKQCVELFEALLLHGRLTLKQMSDRAKSAQNEGDDVILDAV
REAFIKLLNAHFVERCPAAESVLTKPTEEETSARKRVPKSAKILEGKETL
EQRVLEAATPSEALRFLLVTRTEPAADGGKDENNSSNMTVGKKRKLDALE
SETEGEATDEQVVLWRANFEEFIRRLRHKAFIENVRACLDDGAVIVISAM
LEATRTAEKKVKTENSVPLSLNSIYEEVIKSEEGRNITFDRVRASLVQLS
CPPFVKAVNESYSIDFKKIIELAQNDEVESIVLKRYGRDAYRMFRLLSST
ARLLETDKIADTAFVEKKDTTKILYKLWKDDYLHMEKLQLTGARQSQFLL
WKVNKNTLWEHVLDEMFHAALNLSLRVAHELEQEKELLNLPQDKRVNRLR
KVRLLLESSQMKLDDAIMLFHDF*
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