Tc03v2_t013760.1

Overview
NameTc03v2_t013760.1
Unique NameTc03v2_t013760.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1182
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 40 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productgibberellin 20 oxidase 1
NoteGibberellin 20 oxidase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605457
GenbankXM_007038465.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g013760Tc03v2_g013760Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p013760.1Tc03v2_p013760.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto169262auto169262Theobroma cacaoexon
exon-auto169263auto169263Theobroma cacaoexon
exon-auto169264auto169264Theobroma cacaoexon
exon-auto169265auto169265Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto169266auto169266Theobroma cacaoCDS
CDS-auto169267auto169267Theobroma cacaoCDS
CDS-auto169268auto169268Theobroma cacaoCDS
CDS-auto169269auto169269Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t013760.1 ID=Tc03v2_t013760.1|Name=Tc03v2_t013760.1|organism=Theobroma cacao|type=mRNA|length=1182bp
ATGGGCAATCATACCGGTCTCAAAACATTTACTCTTCATGCAATGGCAAT
TGACTGCGTCTCCAACTTAGCCTCCATGCCTCACCATCCGAAAGATGAAA
GAAATGATGAGCAGAAGCAACTGGTTTTTGATGTTTCTGTGCTTAAATAC
GATTCCAACATACCAAAAGAATTTATATGGCCTGACGACGAGAAGCCTTG
CGTTAATGCTCCAGAACTCCAAGTACCACTCATTGACCTAGGAGACTTCC
TGTCTGGTGACTCTGCTGCCGCAAAGGAAGCTTCAAGGCTTGTCGGCGAG
GCATGTCAGCAGCATGGTTTCTTTCTTGTAGTTAATCATGGAGTCGATGC
AACACTCGTAGCTGATGCTCATAAGTACATGGATAACTTCTTTGAATTGC
CACTCAGTGAAAAGCAACGGGCTCACAGAAAACTTGGTGAGCACTGTGGA
TATGCTAGTAGCTTCACTGGCAGGTTCTCCTCCAAGCTGCCATGGAAGGA
AACACTTTCTTTTCGCTATTCAGCAGAGAAAAACTCATCCAGGATGGTTG
AAGATTACCTTGTTAATAAAATGGGAGATGAATTCAGGCAGTTCGGGAGG
GTTTACCAGGACTACTGCGAGGCCATGAGCAAGCTTTCTCTTGGGATCAT
GGAGCTTTTGGCCATTAGTCTGGGCGTAGGCAGAGCACATTTTAGAGAAT
TTTTTGAGGAAAACGATTCGATAATGAGGCTGAATTACTATCCACCTTGC
CAAAAACCAGACCTCACTTTAGGAACAGGGCCTCATTGTGATCCAACGTC
TTTAACCATCCTTCACCAAGACCGAGTTGGTGGTCTTCAAGTGTTTGTAG
ACAATGAATGGCGTTCAATTAGCCCAAATTTCGAAGCATTCGTCGTTAAC
ATTGGCGACACCTTCATGGCTCTTTCAAATGGGAGATACAAAAGTTGCTT
GCACCGGGCGGTTGTGAACAGCCATACCCCAAGAAAATCTCTTGCTTTCT
TTTTGTGTCCAAAGGGTGATAAAGTGGTTACCCCACCAACAGAGTTGGTG
GACGCTTATAGCCCCAGAATATATCCAGATTTTACATGGCCTATGCTGCT
TGAGTTCACACAAAAGCATTACAGAGCTGACATGAACACTCTCGAAGTAT
TCTCAAACTGGGTTCAACAGAGAAACAGCTGA
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protein sequence of Tc03v2_p013760.1

>Tc03v2_p013760.1 ID=Tc03v2_p013760.1|Name=Tc03v2_p013760.1|organism=Theobroma cacao|type=polypeptide|length=394bp
MGNHTGLKTFTLHAMAIDCVSNLASMPHHPKDERNDEQKQLVFDVSVLKY
DSNIPKEFIWPDDEKPCVNAPELQVPLIDLGDFLSGDSAAAKEASRLVGE
ACQQHGFFLVVNHGVDATLVADAHKYMDNFFELPLSEKQRAHRKLGEHCG
YASSFTGRFSSKLPWKETLSFRYSAEKNSSRMVEDYLVNKMGDEFRQFGR
VYQDYCEAMSKLSLGIMELLAISLGVGRAHFREFFEENDSIMRLNYYPPC
QKPDLTLGTGPHCDPTSLTILHQDRVGGLQVFVDNEWRSISPNFEAFVVN
IGDTFMALSNGRYKSCLHRAVVNSHTPRKSLAFFLCPKGDKVVTPPTELV
DAYSPRIYPDFTWPMLLEFTQKHYRADMNTLEVFSNWVQQRNS*
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