Tc03v2_t012850.1

Overview
NameTc03v2_t012850.1
Unique NameTc03v2_t012850.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1701
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
ProductNO-associated protein 1, chloroplastic/mitochondrial, transcript variant X6
NoteNO-associated protein 1, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605348
GenbankXM_007038310.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g012850Tc03v2_g012850Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p012850.1Tc03v2_p012850.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto166873auto166873Theobroma cacaoexon
exon-auto166874auto166874Theobroma cacaoexon
exon-auto166875auto166875Theobroma cacaoexon
exon-auto166876auto166876Theobroma cacaoexon
exon-auto166877auto166877Theobroma cacaoexon
exon-auto166878auto166878Theobroma cacaoexon
exon-auto166879auto166879Theobroma cacaoexon
exon-auto166880auto166880Theobroma cacaoexon
exon-auto166881auto166881Theobroma cacaoexon
exon-auto166882auto166882Theobroma cacaoexon
exon-auto166883auto166883Theobroma cacaoexon
exon-auto166884auto166884Theobroma cacaoexon
exon-auto166885auto166885Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto166886auto166886Theobroma cacaoCDS
CDS-auto166887auto166887Theobroma cacaoCDS
CDS-auto166888auto166888Theobroma cacaoCDS
CDS-auto166889auto166889Theobroma cacaoCDS
CDS-auto166890auto166890Theobroma cacaoCDS
CDS-auto166891auto166891Theobroma cacaoCDS
CDS-auto166892auto166892Theobroma cacaoCDS
CDS-auto166893auto166893Theobroma cacaoCDS
CDS-auto166894auto166894Theobroma cacaoCDS
CDS-auto166895auto166895Theobroma cacaoCDS
CDS-auto166896auto166896Theobroma cacaoCDS
CDS-auto166897auto166897Theobroma cacaoCDS
CDS-auto166898auto166898Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t012850.1 ID=Tc03v2_t012850.1|Name=Tc03v2_t012850.1|organism=Theobroma cacao|type=mRNA|length=1701bp
ATGGCGCTCAAAACCATTTCCACATTCCTCTCTCCCCTTTCTCTTCCAAA
CCACCACAATTTCTCGAACTTCAACACGAAATCTCTCAATATTTACAGAA
AACCCACTCTCGTTTGCTGCAAATCCACTCAGTCACAGACCCAAAACCGG
TTCCCACTCTCGGAAACTCAATTGCTGTCTTCCGAACCTGACGGGACCGG
TGCGGCTGCTCCGACCCGGGGAGACCGGTTCCTCGAAAGGCAACACGCTG
ACGAGGCTGCTAAGCTTGTAATAAAAGAGATAAAGAAAAGTAAAAAGAAG
AAAAAGAAGGTTTTGAAGGTTAACACGGCGGTCGCGAGTTGTTATGGTTG
TGGAGCTCCATTGCAGACTTCGGAGCTTGATGCTCCGGGTTATGTGGATA
CGGATACTTATGAATTGAAGAAAAAACATCACCAGCTAAGAACGGTTCTT
TGTGGGAGATGTAGGCTTTTATCTCATGGGCAAATGATAACTGCTGTTGG
TGGGAATGGAGGTTATCCTGGGGGGAAGCAGTTTGTTTCGGCTGATGAGC
TTCGTGAAAAGCTCTCTAGCTTGCGCCATGAGAAGGCTTTGATTGTTAAA
TTGGTTGATATTGTGGACTTCAATGGCAGCTTTGTATCTCGTGTGCGTGA
TCTTACTGGTGCAAATCCTATAATACTAGTCGTGACGAAGGTTGATCTCC
TTCCAAAAGGGACTGATTTTAATTGTGTGGGTGATTGGGTTGTGGAGGCC
ACTACAAAGAAGAAGCTTAATGTTTTGAGTGTGCATCTTACTAGCTCAAA
GTCCTTAGTAGGGATTGCTGGAGTTGCATCAGAAATCCAAAAGGAGAAGA
AGGGGCGGGATGTATACATTCTGGGATCAGCAAATGTGGGAAAATCTGCA
TTCATAAGTGCTTTACTAAAAATGATGGCACAAAGGGATCCAGCAGCTGC
GGCAGCTCAAAAGTACAAACCAATACAGTCTGCTGTACCTGGAACTACCT
TAGGTCCAATTCAGATTGATGCATTCCTTGGAGGAGGGAAATTGTTTGAT
ACACCCGGGGTTCATCTTCACCATAGGCAAGCTGCCGTAGTTCACTCAGA
AGATTTACCTGTCCTTGCTCCTCAAAGTCGGCTCAGAGGTCAATCATTCC
CTGTGGGCTCCAAAAATGGGATGGCAGAGAAATTCAACTCCATTGGATTA
AAAGGGTTCTCAATATTTTGGGGTGGGCTTGTCAGAATCGATGTCTTGAA
GGTTCTGCCAGAAACGTGTTTAACATTTTATGGACCAAAGAGGTTGCAGA
TTCATGTTGTACCCACTGATGAAGCAGATGAATTTTACAGGAAAGAACTT
GGGGTTAAATTGACACCGCCAACTGGAAAAGACAAAGCAGATGAATGGAG
AGGACTGGAGACAATGCAGCAATTGCAAATTAAATTTGAAGATCCAGAAA
GACCTGCTAGTGATGTGGCTATTTCAGGCCTGGGTTGGATCGCCATTGAA
CCGAAACGCAAGTCTCTTGGAATTTCTGATAATAATTTTGCAGAAACCAT
CAAAGAACTGCATTTGGCAGTCGGTGTACCCAGGCCAGTTGAGATTTTTG
TTCGGCCTCCAATTCCAGTCGGTAAGGCTGGAGCAGAATGGTACCAATAT
CGTGAGTTAACAGAAAAGGAAGAGGAAGTAAGACCAAAGTGGTATTTTTG
A
back to top

protein sequence of Tc03v2_p012850.1

>Tc03v2_p012850.1 ID=Tc03v2_p012850.1|Name=Tc03v2_p012850.1|organism=Theobroma cacao|type=polypeptide|length=567bp
MALKTISTFLSPLSLPNHHNFSNFNTKSLNIYRKPTLVCCKSTQSQTQNR
FPLSETQLLSSEPDGTGAAAPTRGDRFLERQHADEAAKLVIKEIKKSKKK
KKKVLKVNTAVASCYGCGAPLQTSELDAPGYVDTDTYELKKKHHQLRTVL
CGRCRLLSHGQMITAVGGNGGYPGGKQFVSADELREKLSSLRHEKALIVK
LVDIVDFNGSFVSRVRDLTGANPIILVVTKVDLLPKGTDFNCVGDWVVEA
TTKKKLNVLSVHLTSSKSLVGIAGVASEIQKEKKGRDVYILGSANVGKSA
FISALLKMMAQRDPAAAAAQKYKPIQSAVPGTTLGPIQIDAFLGGGKLFD
TPGVHLHHRQAAVVHSEDLPVLAPQSRLRGQSFPVGSKNGMAEKFNSIGL
KGFSIFWGGLVRIDVLKVLPETCLTFYGPKRLQIHVVPTDEADEFYRKEL
GVKLTPPTGKDKADEWRGLETMQQLQIKFEDPERPASDVAISGLGWIAIE
PKRKSLGISDNNFAETIKELHLAVGVPRPVEIFVRPPIPVGKAGAEWYQY
RELTEKEEEVRPKWYF*
back to top