Tc03v2_t012690.5

Overview
NameTc03v2_t012690.5
Unique NameTc03v2_t012690.5
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length987
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductDNA-directed RNA polymerase III subunit rpc4, transcript variant X4
NoteDNA binding protein, putative isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605330
GenbankXM_007038278.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g012690Tc03v2_g012690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p012690.5Tc03v2_p012690.5Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto166449auto166449Theobroma cacaoexon
exon-auto166450auto166450Theobroma cacaoexon
exon-auto166451auto166451Theobroma cacaoexon
exon-auto166452auto166452Theobroma cacaoexon
exon-auto166453auto166453Theobroma cacaoexon
exon-auto166454auto166454Theobroma cacaoexon
exon-auto166455auto166455Theobroma cacaoexon
exon-auto166456auto166456Theobroma cacaoexon
exon-auto166457auto166457Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto166458auto166458Theobroma cacaoCDS
CDS-auto166459auto166459Theobroma cacaoCDS
CDS-auto166460auto166460Theobroma cacaoCDS
CDS-auto166461auto166461Theobroma cacaoCDS
CDS-auto166462auto166462Theobroma cacaoCDS
CDS-auto166463auto166463Theobroma cacaoCDS
CDS-auto166464auto166464Theobroma cacaoCDS
CDS-auto166465auto166465Theobroma cacaoCDS
CDS-auto166466auto166466Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t012690.5 ID=Tc03v2_t012690.5|Name=Tc03v2_t012690.5|organism=Theobroma cacao|type=mRNA|length=987bp
ATGGATCAGGACGGGCCTTCTTCTGGCCGCCGAAAGGTTCGGTTTGCTCC
TAAAGCTCCTCAATCTTCAAGAAGGCTCAAAACCACTGTTTCCAAATCCG
AAGTGAATGATGAAGATGGAGAAGCTGCTCAAGCGCAGTATCTTCTTGGA
CGTTTCAACGAGAATCAAACGCGACAAAGGCCTAAAGTTGAAAAGAAATC
TTCCGCGCAAATTTCTTTTGGTCCTGGAGCCCCCTCATCAAATTTATTGA
GTGCATATGGTAGTCAAAGGGGTGGGACTTCTGGTAAAAGTACTGACTCA
AGGCAGAGAAGTCCTGATGATAATGATGGGCAAATCATTGGTTCTTTCCC
TTCAGCTTCCAAAGAAGATAGGACAGATATATGTTCTTCAGATGCCATTG
AAGCATCAGCACCAAAAATAAAGAGAGAATACCGTGAACCATGGGATTAC
CATCACACTTACTATCCTATTACCCTTCCTCTGAGGAGACCTTACTCTGG
TGACCCTGAACTTCTTGATCAGGCAGAATTTGTAGAGGCTGCTAGAAAGG
AGTATGATGAGAAAACTATTAATCCTGCTTCAGATCTTGGGCTACTGGAG
GAAGGTGAGAAAGGAAAGATGTTTTTCTTTCAGCTTCCCGCTAATCTTCC
TGTAATTAAGCGATTGGCTAGCACAAAGGGGAAAGAAAAAGCTGAGAATT
TAGGATCATCAGAAAGGTTTGGTGCTTTAAAGAAAGGCTGCCAGTTGGAA
GAGTTGCCCGGGGGATTTATGGGGAAGATGTTGGTTTACAAGAGTGGAGC
AGTCAAATTGAAGCTGGGAGAAACACTATATGATGTATCACCTGGTTCAG
ATTGTATATTTGCTCAGGATGTTGCAGCAGTCAACACCACAGAGAAACAC
TGTTGTGTCATCGGAGAGCTTGGAAAACGGGTAGTTGTCACTCCACATAT
TAGTTCTGTCCTAAATTCTGTGATTGACCTGGGCTGA
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protein sequence of Tc03v2_p012690.5

>Tc03v2_p012690.5 ID=Tc03v2_p012690.5|Name=Tc03v2_p012690.5|organism=Theobroma cacao|type=polypeptide|length=329bp
MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLG
RFNENQTRQRPKVEKKSSAQISFGPGAPSSNLLSAYGSQRGGTSGKSTDS
RQRSPDDNDGQIIGSFPSASKEDRTDICSSDAIEASAPKIKREYREPWDY
HHTYYPITLPLRRPYSGDPELLDQAEFVEAARKEYDEKTINPASDLGLLE
EGEKGKMFFFQLPANLPVIKRLASTKGKEKAENLGSSERFGALKKGCQLE
ELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNTTEKH
CCVIGELGKRVVVTPHISSVLNSVIDLG*
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