Tc03v2_t012690.3

Overview
NameTc03v2_t012690.3
Unique NameTc03v2_t012690.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1080
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductDNA-directed RNA polymerase III subunit rpc4, transcript variant X1
NoteDNA binding protein, putative isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605330
GenbankXM_007038277.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g012690Tc03v2_g012690Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p012690.3Tc03v2_p012690.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto166411auto166411Theobroma cacaoexon
exon-auto166412auto166412Theobroma cacaoexon
exon-auto166413auto166413Theobroma cacaoexon
exon-auto166414auto166414Theobroma cacaoexon
exon-auto166415auto166415Theobroma cacaoexon
exon-auto166416auto166416Theobroma cacaoexon
exon-auto166417auto166417Theobroma cacaoexon
exon-auto166418auto166418Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto166419auto166419Theobroma cacaoCDS
CDS-auto166420auto166420Theobroma cacaoCDS
CDS-auto166421auto166421Theobroma cacaoCDS
CDS-auto166422auto166422Theobroma cacaoCDS
CDS-auto166423auto166423Theobroma cacaoCDS
CDS-auto166424auto166424Theobroma cacaoCDS
CDS-auto166425auto166425Theobroma cacaoCDS
CDS-auto166426auto166426Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t012690.3 ID=Tc03v2_t012690.3|Name=Tc03v2_t012690.3|organism=Theobroma cacao|type=mRNA|length=1080bp
ATGGATCAGGACGGGCCTTCTTCTGGCCGCCGAAAGGTTCGGTTTGCTCC
TAAAGCTCCTCAATCTTCAAGAAGGCTCAAAACCACTGTTTCCAAATCCG
AAGTGAATGATGAAGATGGAGAAGCTGCTCAAGCGCAGTATCTTCTTGGA
CGTTTCAACGAGAATCAAACGCGACAAAGGCCTAAAGTTGAAAAGAAATC
TTCCGCGCAAATTTCTTTTGGTCCTGGAGCCCCCTCATCAAATTTATTGA
GTGCATATGGTAGTCAAAGGGGTGGGACTTCTGGTAAAAGTACTGACTCA
AGGCAGAGAAGTCCTGATGATAATGATGGGCAAATCATTGGTTCTTTCCC
TTCAGCTTCCAAAGAAGATAGGACAGATATATGTTCTTCAGATGCCATTG
AAGCATCAGCACCAAAAATAAAGAGAGAATACCGTGAACCATGGGTAAAA
GTTTGCTCATTGTTTGTGTGTTTAAGACCGAGTGCACATTTGTGTGCAAT
TCCTCTGATACTGCTGAGTTCCATGATCGCATTGCAGGATTACCATCACA
CTTACTATCCTATTACCCTTCCTCTGAGGAGACCTTACTCTGGTGACCCT
GAACTTCTTGATCAGGCAGAATTTGTAGAGGCTGCTAGAAAGGAGTATGA
TGAGAAAACTATTAATCCTGCTTCAGATCTTGGGCTACTGGAGGAAGGTG
AGAAAGGAAAGATGTTTTTCTTTCAGCTTCCCGCTAATCTTCCTGTAATT
AAGCGATTGGCTAGCACAAAGGGGAAAGAAAAAGCTGAGAATTTAGGATC
ATCAGAAAGGTTTGGTGCTTTAAAGAAAGGCTGCCAGTTGGAAGAGTTGC
CCGGGGGATTTATGGGGAAGATGTTGGTTTACAAGAGTGGAGCAGTCAAA
TTGAAGCTGGGAGAAACACTATATGATGTATCACCTGGTTCAGATTGTAT
ATTTGCTCAGGATGTTGCAGCAGTCAACACCACAGAGAAACACTGTTGTG
TCATCGGAGAGCTTGGAAAACGGGTAGTTGTCACTCCACATATTAGTTCT
GTCCTAAATTCTGTGATTGACCTGGGCTGA
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protein sequence of Tc03v2_p012690.3

>Tc03v2_p012690.3 ID=Tc03v2_p012690.3|Name=Tc03v2_p012690.3|organism=Theobroma cacao|type=polypeptide|length=360bp
MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLG
RFNENQTRQRPKVEKKSSAQISFGPGAPSSNLLSAYGSQRGGTSGKSTDS
RQRSPDDNDGQIIGSFPSASKEDRTDICSSDAIEASAPKIKREYREPWVK
VCSLFVCLRPSAHLCAIPLILLSSMIALQDYHHTYYPITLPLRRPYSGDP
ELLDQAEFVEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVI
KRLASTKGKEKAENLGSSERFGALKKGCQLEELPGGFMGKMLVYKSGAVK
LKLGETLYDVSPGSDCIFAQDVAAVNTTEKHCCVIGELGKRVVVTPHISS
VLNSVIDLG*
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