Tc03v2_t011480.1

Overview
NameTc03v2_t011480.1
Unique NameTc03v2_t011480.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2490
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
CommentThe sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
ProductADP-ribosylation factor GTPase-activating protein AGD1
NoteADP-ribosylation factor GTPase-activating protein AGD1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605194
GenbankXM_018117899.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g011480Tc03v2_g011480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p011480.1Tc03v2_p011480.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto163761auto163761Theobroma cacaoexon
exon-auto163762auto163762Theobroma cacaoexon
exon-auto163763auto163763Theobroma cacaoexon
exon-auto163764auto163764Theobroma cacaoexon
exon-auto163765auto163765Theobroma cacaoexon
exon-auto163766auto163766Theobroma cacaoexon
exon-auto163767auto163767Theobroma cacaoexon
exon-auto163768auto163768Theobroma cacaoexon
exon-auto163769auto163769Theobroma cacaoexon
exon-auto163770auto163770Theobroma cacaoexon
exon-auto163771auto163771Theobroma cacaoexon
exon-auto163772auto163772Theobroma cacaoexon
exon-auto163773auto163773Theobroma cacaoexon
exon-auto163774auto163774Theobroma cacaoexon
exon-auto163775auto163775Theobroma cacaoexon
exon-auto163776auto163776Theobroma cacaoexon
exon-auto163777auto163777Theobroma cacaoexon
exon-auto163778auto163778Theobroma cacaoexon
exon-auto163779auto163779Theobroma cacaoexon
exon-auto163780auto163780Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto163781auto163781Theobroma cacaoCDS
CDS-auto163782auto163782Theobroma cacaoCDS
CDS-auto163783auto163783Theobroma cacaoCDS
CDS-auto163784auto163784Theobroma cacaoCDS
CDS-auto163785auto163785Theobroma cacaoCDS
CDS-auto163786auto163786Theobroma cacaoCDS
CDS-auto163787auto163787Theobroma cacaoCDS
CDS-auto163788auto163788Theobroma cacaoCDS
CDS-auto163789auto163789Theobroma cacaoCDS
CDS-auto163790auto163790Theobroma cacaoCDS
CDS-auto163791auto163791Theobroma cacaoCDS
CDS-auto163792auto163792Theobroma cacaoCDS
CDS-auto163793auto163793Theobroma cacaoCDS
CDS-auto163794auto163794Theobroma cacaoCDS
CDS-auto163795auto163795Theobroma cacaoCDS
CDS-auto163796auto163796Theobroma cacaoCDS
CDS-auto163797auto163797Theobroma cacaoCDS
CDS-auto163798auto163798Theobroma cacaoCDS
CDS-auto163799auto163799Theobroma cacaoCDS
CDS-auto163800auto163800Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t011480.1 ID=Tc03v2_t011480.1|Name=Tc03v2_t011480.1|organism=Theobroma cacao|type=mRNA|length=2490bp
ATGCATTTCTCCAAACTCGACGATACGCCGATGTTTCGGCAAGAGATACA
GTGCTTGGAAGAGAACGCCGAGTTATTGCGAGGAAGATGTTTAAAATTTT
ACAAAGGATGTCGAAAATACATAGAAGGGCTTGGAGAGGGTTATGATGGC
GACATTGCTTTTGTAAATGCCCTTGAAACTTTTGGAGGGGGGCATAATGA
TCCTATCTGTGTTGCTTTTGGAGGCCCAGTCATGACAAAATTCACCATTG
CTTTGAGAGAAATTGGCACATACAAGGAAGTTCTTCGCTCACAGATAGAG
CACATGCTAAATGAAAGGTTGCTTCAGTTTGTCAATGTTGATCTGCAAGA
TGTCAAGGATGCTCGGAAACGTTTTGACAAGGCTTCACTTATATATGATC
AGGCAAGGGAGAAGTTTCTGTCTTTAAGGAAAAGCACTAGGATGGATGTA
GCTGCGGCCATTGAGGAGGAACTACATACTGCAAGAACCTCATTTGAGCA
AGCCCGCTTCAATCTGGTTAGTGCTCTTTCAAAATTTGAAGCCAAAAAAA
GGTTTGAATTTTTGGAGGCTGTTAGTGGGACGATGGATGCTCACCTTCGT
TTCTTCAAACAGGGATATGAACTCTTACATCAGATGGAACCTTTTATAAA
CCAGGTCTTGGCTTATGCACAACAGTCAAGGGAATGTTCTAACTATGAAC
AGGCATCTCTAAGTGAAAGGATGCAGGAACATATCAGGCAGATTGATCTC
AAGAGTAAGCAGTCCTGCTATGTTTGTCCTGCCACAGCGGATGGTATGCG
ACCTTTTGCAAGGGGTTCCCAGAAAGTTATTGAGGCAGTTATGCAATCTG
CTGAAAAGGGAAAGGTTCAAACCATACGACAAGGTTATCTTTCAAAACGT
TCCTCAAACTTGAGGGGTGACTGGAAGAGAAGGTTTTTTGTTCTTGATAG
TCAAGGGATGTTGTACTACTATCGTAAACCATTTGCCTGGTCTTCTGCAG
GTGGAAGTCAGTCTGCTATACAAAGGAGTGGTCCCTCTGAAAGTGGTCCT
GGGCTGCTAAGTCGATGGCTTTCTTCTCACTACCATGGTGGCGTACATGA
TGAAAAATCTGTTGCACGTCACACTGTAAACTTGCTGACAGCAACAATTA
AGGTTGACGCAGATCAGTCAGATTTAAGGTTTTGTTTCAGAATCATCTCA
CCAACAAAAATCTATACATTGCAGGCAGAGAATGCACTGGACCAAAGGGA
TTGGATTGAAAAAATAACTGGAGTAATTGCTTCATTATTGAGTTTCCAAA
CACCTGAGAAGTGCCTCTCTGCTTACAACATGGGAACTGCTGATAATTGC
TCTGCCAGTGATTGTAGTTCACTAGTAGATTCCTCTGATGCTTATCAGAC
AGCAGTTGGAGAACATACATCTCAGAATCTCTCCTCTGGAAGTCATTTAG
ATATATCGAGAAGTTTGCAGCATCAAGGGTATTGCATAAAGAGTGAAAAG
CCAATTGATATCTTAAGAAGGGTAGCTGGGAATGATAAATGTGTCGACTG
TGGTGCACCTGAGCCAGACTGGGCATCTTTAAACCTCGGTGTCCTTATAT
GCATTGAATGTTCTGGAGTTCATCGTAATCTTGGTGTACATATATCAAAG
ATAAGATCACTGACACTTGACGTTAAAGTGTGGGAACCATCTGTCCTGGC
TTTGTTTCAATCACTGGGCAATATCTATGCAAACTCAATCTGGGAGGAGT
TGTTGCACTCAAGAAGTACAAGAACTGCCATGCCTGTAGGTTCTTCAAAG
TCTGATGTACATAAACAGCTTCTCACAATGAAACCTAGTTACAATGATCC
GATTTCAGTGAAGGAGTTGTTCATTCATGCAAAGTATGCAGAGAAAGCTT
TTGTTTCTAAGAAACAGGACAATCAGCATCTCCTTGCAGTGGCAGAAGAG
GTGTGGGAAAGTGTCCGTGCTAATGACCAAAAAGCTGTATACCGCCACAT
TGTTTGCTCTGGAGCAGATGTCAATGCTATCCATGGGCAAGCATCATATT
GTACATCCTTAACTCTTACCAAAAGTAATTTATGGGAAGACCAAGAAATC
CCTCATCACAACTTTGATTGCTTTGCAGGTGACTCTCTGGATCAGCCCTC
CAGATATTTGAACTCATTAAACAAAAGTGAAGATCAGATTGAAAAGGAGT
GTTCTGATGGTTGTTCTCTACTTCATCTCGCCTGCCTGACCACTGACATT
GGCATGGTGGAGCTTCTCCTTCAGTATGGTGCAAACATAAATGCTTCTGA
TTCAAGAGGTCGGACACCGCTTCATCTTTGTGTTGTTAGCGGGAAATCTT
CAATAGCAAAATTGCTGCTTACAAGGGGAGCAGACCCGCATGCTGTAGAT
GGAGAAGGTAACACTGCGCTTCAGCTTGCATCAGCATCAGGCATTGATGA
TAATGAGGTCTTGGCGCTCTTAACAGACACACACAGATAG
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protein sequence of Tc03v2_p011480.1

>Tc03v2_p011480.1 ID=Tc03v2_p011480.1|Name=Tc03v2_p011480.1|organism=Theobroma cacao|type=polypeptide|length=830bp
MHFSKLDDTPMFRQEIQCLEENAELLRGRCLKFYKGCRKYIEGLGEGYDG
DIAFVNALETFGGGHNDPICVAFGGPVMTKFTIALREIGTYKEVLRSQIE
HMLNERLLQFVNVDLQDVKDARKRFDKASLIYDQAREKFLSLRKSTRMDV
AAAIEEELHTARTSFEQARFNLVSALSKFEAKKRFEFLEAVSGTMDAHLR
FFKQGYELLHQMEPFINQVLAYAQQSRECSNYEQASLSERMQEHIRQIDL
KSKQSCYVCPATADGMRPFARGSQKVIEAVMQSAEKGKVQTIRQGYLSKR
SSNLRGDWKRRFFVLDSQGMLYYYRKPFAWSSAGGSQSAIQRSGPSESGP
GLLSRWLSSHYHGGVHDEKSVARHTVNLLTATIKVDADQSDLRFCFRIIS
PTKIYTLQAENALDQRDWIEKITGVIASLLSFQTPEKCLSAYNMGTADNC
SASDCSSLVDSSDAYQTAVGEHTSQNLSSGSHLDISRSLQHQGYCIKSEK
PIDILRRVAGNDKCVDCGAPEPDWASLNLGVLICIECSGVHRNLGVHISK
IRSLTLDVKVWEPSVLALFQSLGNIYANSIWEELLHSRSTRTAMPVGSSK
SDVHKQLLTMKPSYNDPISVKELFIHAKYAEKAFVSKKQDNQHLLAVAEE
VWESVRANDQKAVYRHIVCSGADVNAIHGQASYCTSLTLTKSNLWEDQEI
PHHNFDCFAGDSLDQPSRYLNSLNKSEDQIEKECSDGCSLLHLACLTTDI
GMVELLLQYGANINASDSRGRTPLHLCVVSGKSSIAKLLLTRGADPHAVD
GEGNTALQLASASGIDDNEVLALLTDTHR*
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