Tc03v2_t010440.1

Overview
NameTc03v2_t010440.1
Unique NameTc03v2_t010440.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1539
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Producturidine kinase-like protein 1, chloroplastic, transcript variant X1
NoteUridine kinase-like protein 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605085
GenbankXM_018117795.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g010440Tc03v2_g010440Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p010440.1Tc03v2_p010440.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto161437auto161437Theobroma cacaoexon
exon-auto161438auto161438Theobroma cacaoexon
exon-auto161439auto161439Theobroma cacaoexon
exon-auto161440auto161440Theobroma cacaoexon
exon-auto161441auto161441Theobroma cacaoexon
exon-auto161442auto161442Theobroma cacaoexon
exon-auto161443auto161443Theobroma cacaoexon
exon-auto161444auto161444Theobroma cacaoexon
exon-auto161445auto161445Theobroma cacaoexon
exon-auto161446auto161446Theobroma cacaoexon
exon-auto161447auto161447Theobroma cacaoexon
exon-auto161448auto161448Theobroma cacaoexon
exon-auto161449auto161449Theobroma cacaoexon
exon-auto161450auto161450Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto161451auto161451Theobroma cacaoCDS
CDS-auto161452auto161452Theobroma cacaoCDS
CDS-auto161453auto161453Theobroma cacaoCDS
CDS-auto161454auto161454Theobroma cacaoCDS
CDS-auto161455auto161455Theobroma cacaoCDS
CDS-auto161456auto161456Theobroma cacaoCDS
CDS-auto161457auto161457Theobroma cacaoCDS
CDS-auto161458auto161458Theobroma cacaoCDS
CDS-auto161459auto161459Theobroma cacaoCDS
CDS-auto161460auto161460Theobroma cacaoCDS
CDS-auto161461auto161461Theobroma cacaoCDS
CDS-auto161462auto161462Theobroma cacaoCDS
CDS-auto161463auto161463Theobroma cacaoCDS
CDS-auto161464auto161464Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t010440.1 ID=Tc03v2_t010440.1|Name=Tc03v2_t010440.1|organism=Theobroma cacao|type=mRNA|length=1539bp
ATGAGATGCTGCTTATGGTATATATATGCCTGCAGATTGCAAAACCACAA
GTTATGTTTCCTTTTCCTACACCAAAACACAGGGATCAAAACGAAGCCAA
AGTCAGGCGAAACGAGGAATCCGTCTTCAACTATGGATCACGTAATGCAT
GCTACCTCCGGGGCTCATTTCTCCGGTTTGCGGCCCGACGGTATTGTTTC
GTCGCAGCTGACCGTACCACAACCCGCTGAATATAATGCTCCCAAACAAC
CTTTTGTTATCGGAGTCTCTGGAGGAACTGCATCGGGCAAAACAACGGTG
TGCGACAAGATCATACACCAACTTCATGACCATAGAGTTGTACTTGTCAA
TCAGGATTCATTCTACCGTGGATTGACAGATGAGGAAGTGAAGCTTGTCC
ATGAATTTAATTTTGATCATCCTGATGCATTTGATACAGAACAAATGTTG
GAATGTATTTGCAAGCTTAAATCTGGTCAATCTGTTCATCTTCCAATATA
TGATTTCAAGCAGCATCGGCGTCGCTCTGACAGTTTCAGACAGGTCAATG
CATCTGAGGTCATAATCTTGGAGGGGATATTGGTACTTCATGATCAACGT
GTTCGTCAATTGATGAATATGAAGATCTTTGTTGATGCTGATGCTGATGT
GAGGCTTGCCCGCAGAATAAATCGTGACACTGTTGAGAGGGGCAGAACTT
TACAATCTGTTCTTGAACAGTATGCAAAATTTGTGAAACCAGCTTTTGAT
GATTTTATTCTGCCATCAAAAAAGTATGCGGATGTTATCATACCCCGTGG
TGGTGAGAATCATGTAGCAATTGATTTGATTGTGCAACATGTTGGTACAA
AGCTTGGTCAGCACAACCTCTGCAAAATATATCCCAACCTGAATGTGATT
CAGTCAACATTCCAGATTAGGGGTATGCACACTCTTATTCGTGACAGAGA
TACAAATAAAAACGATTTTGCTTTTTATTCAGACCGGCTAATCCGACTGG
TGGTGGAGCATGGGCTCGGATACCTGCCATTCACTGAGAAACAAGTGATC
ACACCTACAGGATCGGTATACGCTGGAGTTGATTTCTGCAAGAAACTGTG
TGGAGTATCCATTGTTCGCAGTGGTGAAAGCATGGAGAACGCACTGCGAG
CTTGCTGCAAAGGAATCAGAATAGGGAAAATCCTCATCCACCGTGAAGGT
GATAAAGGAAAACAGCTTATATATGAGAAGCTTCCCATAGATATTTCTCA
AAGGCATGCACTGCTTCTGGATCCTGTTCTCGCAACAGGTTACTCTGCCA
AGCAAGCCATCCAACTTCTCCTAGAGAAGGGTGTTCCAGAGTCCCAGATA
ATATTTCTTAACCTGGTCTCTGCACCGGAGGGAATACATTGTGTCTGCAG
ACAGTTCCCGTCTGTAAAAATTGTCACGTCAGAGATAGATGTTGCGTTGA
ATGAAGAACTCCGAGTTATACCAGGGCTGGGTGAGTTTGGTGATCGATAC
TTCGGTACAGATAATTATTCATTGCCGATTGAAGACTGA
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protein sequence of Tc03v2_p010440.1

>Tc03v2_p010440.1 ID=Tc03v2_p010440.1|Name=Tc03v2_p010440.1|organism=Theobroma cacao|type=polypeptide|length=513bp
MRCCLWYIYACRLQNHKLCFLFLHQNTGIKTKPKSGETRNPSSTMDHVMH
ATSGAHFSGLRPDGIVSSQLTVPQPAEYNAPKQPFVIGVSGGTASGKTTV
CDKIIHQLHDHRVVLVNQDSFYRGLTDEEVKLVHEFNFDHPDAFDTEQML
ECICKLKSGQSVHLPIYDFKQHRRRSDSFRQVNASEVIILEGILVLHDQR
VRQLMNMKIFVDADADVRLARRINRDTVERGRTLQSVLEQYAKFVKPAFD
DFILPSKKYADVIIPRGGENHVAIDLIVQHVGTKLGQHNLCKIYPNLNVI
QSTFQIRGMHTLIRDRDTNKNDFAFYSDRLIRLVVEHGLGYLPFTEKQVI
TPTGSVYAGVDFCKKLCGVSIVRSGESMENALRACCKGIRIGKILIHREG
DKGKQLIYEKLPIDISQRHALLLDPVLATGYSAKQAIQLLLEKGVPESQI
IFLNLVSAPEGIHCVCRQFPSVKIVTSEIDVALNEELRVIPGLGEFGDRY
FGTDNYSLPIED*
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