Tc03v2_t009090.4

Overview
NameTc03v2_t009090.4
Unique NameTc03v2_t009090.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1107
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productprobable WRKY transcription factor 4, transcript variant X4
NoteHypothetical protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604930
GenbankXM_018118376.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g009090Tc03v2_g009090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p009090.4Tc03v2_p009090.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto158360auto158360Theobroma cacaoexon
exon-auto158361auto158361Theobroma cacaoexon
exon-auto158362auto158362Theobroma cacaoexon
exon-auto158363auto158363Theobroma cacaoexon
exon-auto158364auto158364Theobroma cacaoexon
exon-auto158365auto158365Theobroma cacaoexon
exon-auto158366auto158366Theobroma cacaoexon
exon-auto158367auto158367Theobroma cacaoexon
exon-auto158368auto158368Theobroma cacaoexon
exon-auto158369auto158369Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto158370auto158370Theobroma cacaoCDS
CDS-auto158371auto158371Theobroma cacaoCDS
CDS-auto158372auto158372Theobroma cacaoCDS
CDS-auto158373auto158373Theobroma cacaoCDS
CDS-auto158374auto158374Theobroma cacaoCDS
CDS-auto158375auto158375Theobroma cacaoCDS
CDS-auto158376auto158376Theobroma cacaoCDS
CDS-auto158377auto158377Theobroma cacaoCDS
CDS-auto158378auto158378Theobroma cacaoCDS
CDS-auto158379auto158379Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t009090.4 ID=Tc03v2_t009090.4|Name=Tc03v2_t009090.4|organism=Theobroma cacao|type=mRNA|length=1107bp
ATGAGAAGAATGTCATTTCGAACGAGAACCAACATTGAATTGGTTGATGA
TGGTTATAAATGGAGGAAATATGGAAAGAAACAAGTCAAGGGAAATCCCA
ACTCAAGGAACTATTACAAATGTTCGACAGAACTTTGTCCAGTGAAGAAA
AGGGTTGAGCGAGACCACCTTGATACGAGATATTTGATCTCCACCTACGA
TGGGATCCATAACCATGAGCGGCCTTTTGTCAAGGCGTTGAATAACATGG
AAGATGCTGCTGAGGCAGCTAAGACTATCAGCCCTAGAAAAGGTTACGGA
GATGTATTGGAAGCATCAACACAAGATAAAGGTCAACATCCTGCACAAGA
TGATAAAGGCCACTGGTCAGATTACACGGAGAGAATAACTGGAACAGATG
TGAGAAAGTCAATTTCTTCAGTATGCATACTTCCGCCCACTCCAGGGCCC
GAGGCACCAGAACAACCGTGGTGCTTTTCATCAGAGAAGATCAATGAAGT
AGACGATGATGAAGATGAACCCAAGGCCAAAAGATGGAACTATACTGAGA
ATGAAAACAAGGGTACCGTAGGTTCTGCGAGCGAAGCCGCGAGTGGTTAT
AGAGTTGCATTTCGAACGAGAACCAACATTGAATTGCTTGATGATGGTTA
TAAATGGAGGAAATATGGAAAGAAACAAGTCAAGGGAAATCCCAACTCAA
GGAACTATTACAAATGTTCGACAGTAGCTTGTCCGGTGAAGAAAAGGGTT
GAGCGAGACCCCCTTGATACGAGATATTTGATCACCACCTACGAAGGGAT
GCATAACCATGAGTCGCCTTTTGTCAAGGCGTTGAATAACATGGAAGATG
CTGCTGAGGCAGCTGAGACTATCAGCCCTACAAAAGGTTACGGAGATGTA
TTGGAAGCATCAACACAAGATAAAGGTCAACATCCTGCAGCGAACTACTT
GAACTTCAAGGGCTTGATGGATCTTACTGGCCAAACCATTGCTGACATGT
TCGAGGGAAGGAACCCGGAGGAGATGAGGAATATTTTTAACATCGAGAAT
GACTTCACCCTTGAGGAAGAGGAGGATTGGCCGGGAAAATATTCAGTGGG
TTTATAA
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protein sequence of Tc03v2_p009090.4

>Tc03v2_p009090.4 ID=Tc03v2_p009090.4|Name=Tc03v2_p009090.4|organism=Theobroma cacao|type=polypeptide|length=369bp
MRRMSFRTRTNIELVDDGYKWRKYGKKQVKGNPNSRNYYKCSTELCPVKK
RVERDHLDTRYLISTYDGIHNHERPFVKALNNMEDAAEAAKTISPRKGYG
DVLEASTQDKGQHPAQDDKGHWSDYTERITGTDVRKSISSVCILPPTPGP
EAPEQPWCFSSEKINEVDDDEDEPKAKRWNYTENENKGTVGSASEAASGY
RVAFRTRTNIELLDDGYKWRKYGKKQVKGNPNSRNYYKCSTVACPVKKRV
ERDPLDTRYLITTYEGMHNHESPFVKALNNMEDAAEAAETISPTKGYGDV
LEASTQDKGQHPAANYLNFKGLMDLTGQTIADMFEGRNPEEMRNIFNIEN
DFTLEEEEDWPGKYSVGL*
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