Tc03v2_t009000.1

Overview
NameTc03v2_t009000.1
Unique NameTc03v2_t009000.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length687
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 86% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Productuncharacterized LOC18604918
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604918
GenbankXM_018117080.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g009000Tc03v2_g009000Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p009000.1Tc03v2_p009000.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto158174auto158174Theobroma cacaoexon
exon-auto158175auto158175Theobroma cacaoexon
exon-auto158176auto158176Theobroma cacaoexon
exon-auto158177auto158177Theobroma cacaoexon
exon-auto158178auto158178Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto158179auto158179Theobroma cacaoCDS
CDS-auto158180auto158180Theobroma cacaoCDS
CDS-auto158181auto158181Theobroma cacaoCDS
CDS-auto158182auto158182Theobroma cacaoCDS
CDS-auto158183auto158183Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t009000.1 ID=Tc03v2_t009000.1|Name=Tc03v2_t009000.1|organism=Theobroma cacao|type=mRNA|length=687bp
ATGGTGTCCATAAGGTTTTTTGGCTTTGTACTTGTGTTCATTTTGGTTCT
TACAGGAGAGTCAGCTGCAGATAGCCAAGTTCTGAAGAGAATATTGGCTG
CACATGGATGTGTTATTGAACCAGCAAGAAAAAACCCGGCCAAATTAGGA
AAGGAAGTTTATGATGCTGTGCCTGCGGCAGCAGAAGTAGGGAATTCTAG
GCTTGAAGGAAGGAAAATGATGTTAAAATGGGGTTTGGATAAAAAGACAG
TGACAGTGGAAGGTTCGGATGGAGAAGAGAGTGCAAAGATTACAGGAAAG
GTTACAAATGCTTTAAACAACCAGATTGGGAGCTCACAAGAGAAGTTCAA
TTATCAGGATGACAGAAACATGTTGAAGGCAAAGTTCCTAAGCTCTGCAA
CCCCAGAAGCTTCTAGGAAGCATTCAGTTAAACTCCCAAGTAGAAACCAG
CTCTGCTTCCAATATTCCAAGCCTGTTTCTGACAAGGGCAGCTCGGAATG
TTTCTCAAGGTCCCCAAAACTAGTTCCCCGAGATTCTGATAATTCCCTTG
AGAAACATCAATCCAAAAAGCTTCTTGAAGCTGCCAGAGATTTATTGAAT
TTTATGAACGAAGACTACCGGATACCACCTACGAAGCCTCCTGTCCACAA
TTATGAGCCTCTGGATCAAAAACAAGCAATTCCGTGA
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protein sequence of Tc03v2_p009000.1

>Tc03v2_p009000.1 ID=Tc03v2_p009000.1|Name=Tc03v2_p009000.1|organism=Theobroma cacao|type=polypeptide|length=229bp
MVSIRFFGFVLVFILVLTGESAADSQVLKRILAAHGCVIEPARKNPAKLG
KEVYDAVPAAAEVGNSRLEGRKMMLKWGLDKKTVTVEGSDGEESAKITGK
VTNALNNQIGSSQEKFNYQDDRNMLKAKFLSSATPEASRKHSVKLPSRNQ
LCFQYSKPVSDKGSSECFSRSPKLVPRDSDNSLEKHQSKKLLEAARDLLN
FMNEDYRIPPTKPPVHNYEPLDQKQAIP*
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