Tc03v2_t008370.1

Overview
NameTc03v2_t008370.1
Unique NameTc03v2_t008370.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2361
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 39 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
Productrespiratory burst oxidase homolog protein A
NotePutative Respiratory burst oxidase homolog protein A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604835
GenbankXM_007037507.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g008370Tc03v2_g008370Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p008370.1Tc03v2_p008370.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto156777auto156777Theobroma cacaoexon
exon-auto156778auto156778Theobroma cacaoexon
exon-auto156779auto156779Theobroma cacaoexon
exon-auto156780auto156780Theobroma cacaoexon
exon-auto156781auto156781Theobroma cacaoexon
exon-auto156782auto156782Theobroma cacaoexon
exon-auto156783auto156783Theobroma cacaoexon
exon-auto156784auto156784Theobroma cacaoexon
exon-auto156785auto156785Theobroma cacaoexon
exon-auto156786auto156786Theobroma cacaoexon
exon-auto156787auto156787Theobroma cacaoexon
exon-auto156788auto156788Theobroma cacaoexon
exon-auto156789auto156789Theobroma cacaoexon
exon-auto156790auto156790Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto156791auto156791Theobroma cacaoCDS
CDS-auto156792auto156792Theobroma cacaoCDS
CDS-auto156793auto156793Theobroma cacaoCDS
CDS-auto156794auto156794Theobroma cacaoCDS
CDS-auto156795auto156795Theobroma cacaoCDS
CDS-auto156796auto156796Theobroma cacaoCDS
CDS-auto156797auto156797Theobroma cacaoCDS
CDS-auto156798auto156798Theobroma cacaoCDS
CDS-auto156799auto156799Theobroma cacaoCDS
CDS-auto156800auto156800Theobroma cacaoCDS
CDS-auto156801auto156801Theobroma cacaoCDS
CDS-auto156802auto156802Theobroma cacaoCDS
CDS-auto156803auto156803Theobroma cacaoCDS
CDS-auto156804auto156804Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t008370.1 ID=Tc03v2_t008370.1|Name=Tc03v2_t008370.1|organism=Theobroma cacao|type=mRNA|length=2361bp
ATGGAGATACGTAAAGGGTCTCAATCAGCTCAAAAGCACCCAGCTAACTT
AGCTCTTTCACCATCTTCTTCTTCCTCCTCCTGCTCCTCTTTTAGTGCTA
GCGTTGTGCCTCTTACCTGCTCTCCGGTTGAGCAAACCGCTCTGCCATAT
AGGATGGGGAGTAGAGGGATATCCATAGTCAGCTTGTCTGACTGTGAACG
GCTGAGATTCGTCGACACTGCAGGGAACGAGTGGAGGATTGTTGAGAACC
GGTTCAACCGGCTTGCTATCACCGGAAATGGGCATGAACCGGTTGTGAAG
TGGTCGGATTTTGGTTCTTGCATAGGAATGAGAGAATCACCAGAATTTGC
TAATGAGCTCTTAAGAGCAATGAGAGGAAGAAGAGATTGGAAAAAGGATA
TCACAAAAAATGAACTTCACAGTTATTGGTGTCGCATGACAGATCCCTGG
TTGGATTCAAGGATAGAATTATTCTTTGACCTCTGTGACAGAAATATGGA
TGGAAGAATCAATGAGAGGGACATCACGAAGGTTATCTTGTTAAGTGCTC
CCATAAATAAGTTGTCAGTAAAGCATGAGGAAGCTGAGGAACAAGCTAGT
TTAATCATGGAAGTGCTTGACATTGAACACCGAGGCTATATCGAGCCATC
TCAATTGGAAAGTCTCTTCAAAGTAAGCTTACCAAAGGGCTCCTCTGCAA
CTTCATATCAAAAGGATCAAAAACTAGAGCCGACGTCAAAGGCCGAGATC
TTGTTTCGGTCCTATTGGAGACGGACATGGATAATTCTGTTTTGGTTGAT
AGTTTGCTTTGCACTCTTCACATGGAAATTCATCCAATACAGCCATAGAA
CAGCTTTCCAAGTCATGGGGTACTGTCTATCCACTGCCAAAGGAGCAGCA
GAGACCCTGAAATTCAACATGGCTCTGATTCTCCTCCCTGTTTGTCGAAA
TACGATAACATGGCTACGCAAGAATAGTGGGTTCAACTCGGTTATTCCAT
TTAATGATAACATCAATTTTCACAAACTAATTGCAGGAGGGATAGTGATT
GGTGTTCTCCTCCATGGCGGCACACATCTTGCGTGTGATTTTCCAAGAAT
TAGTGGATCTGATAGTTCCACTTTTCGACAAACTATAGCAGCTAGATTTG
GCTATCAGCAACCATCATACTTCCAAATATTGGCCACAACAGAGGTTGCA
ACAGGAATTGCTATGGTGATAGTAATGATGATAGCATTCTCACTAGCAAC
AAAATGGCCTCGCCGCCAGACTTCTCCGCTGCCAAGGTCGGTTCGGAAGG
TCACTGGTTATAATACATTTTGGTACTCCCACCATCTATTCATTCTGGTG
TATGCTTTGCTCATTGTTCACTCAATGTTCCTCTTCCTGACAGATAATCT
AACTGAAAAGACGACATGGATGTATATTGCCATACCGGTTCTATTATATG
CTGGCGAGCGGATAATTCGAGCCATAAGATCAGGGTTTTGTGAGGTGGAA
ATTTGGAAGGTAAACCTGTATCCAGGAAAAGTGTTGTCCCTCAAATTGCG
AAAACCAGAAGGTTTTAGTCACAAGAGTGGCATGTACATTTTCATCCAGT
GCCCTCAAATTTCACCCTTTGAATGGCACCCATTTTCCCTAACTTGTGGA
CCAAAGGATGATTACTTAAGTGTGCATATCAGAACTCTTGGAGACTGGAG
CTATCAGCTATACAGTCTCTTCCAGGAGGCACAAGTAACAAGACTAAAGC
AGTATCCCAAAATCTATATTGATGGACCTTATGGTGCGGCTTCACAAGAC
CACATCAAGTATGATATTGTGGTGATGGTTGGCCTTGGCATAGGGGTCAC
ACCCTTTATTAGCATCCTCAAAGATTTTGCTAGCCGCGTCAAAAAACCAA
ACATTAATCATGCAGCCAGCGGGGAAGGCAGAATTGAGAAAGGTCCATTG
AAAGCTTATCTTTATTGGGTTACAAGAGAACAAAGCTCTTTTAATTGGTT
CATGGATGTCATGCAGGAAATAGCAGAAACAAACCAAAAGCAGTCTGTTG
TAGAGGTATTCAATTTCCTAACCAGTGTATATCAAGAGGGGGATGCTCGG
TCGGCTTTAATCAGCATTATTCAATCCCTGTATCATGCCAAGAATGGAAT
GGACATTGTCTCTCGAACTCCGGTACATACCCATTTCGCTAGACCAAATT
GGTTCAACATCTTCTCAAACTTGGCTCGGAGACATAGAGGAGCACGGATT
GGGGTTTTCTACTGTGGACCATTGGCATTAGCAAGAGAATTGGAGAGGTT
GTGCACCAAATTCTCCACCAAAACCACCACAAGATTTGTATTTCATAAGG
AGAACTACTAG
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protein sequence of Tc03v2_p008370.1

>Tc03v2_p008370.1 ID=Tc03v2_p008370.1|Name=Tc03v2_p008370.1|organism=Theobroma cacao|type=polypeptide|length=787bp
MEIRKGSQSAQKHPANLALSPSSSSSSCSSFSASVVPLTCSPVEQTALPY
RMGSRGISIVSLSDCERLRFVDTAGNEWRIVENRFNRLAITGNGHEPVVK
WSDFGSCIGMRESPEFANELLRAMRGRRDWKKDITKNELHSYWCRMTDPW
LDSRIELFFDLCDRNMDGRINERDITKVILLSAPINKLSVKHEEAEEQAS
LIMEVLDIEHRGYIEPSQLESLFKVSLPKGSSATSYQKDQKLEPTSKAEI
LFRSYWRRTWIILFWLIVCFALFTWKFIQYSHRTAFQVMGYCLSTAKGAA
ETLKFNMALILLPVCRNTITWLRKNSGFNSVIPFNDNINFHKLIAGGIVI
GVLLHGGTHLACDFPRISGSDSSTFRQTIAARFGYQQPSYFQILATTEVA
TGIAMVIVMMIAFSLATKWPRRQTSPLPRSVRKVTGYNTFWYSHHLFILV
YALLIVHSMFLFLTDNLTEKTTWMYIAIPVLLYAGERIIRAIRSGFCEVE
IWKVNLYPGKVLSLKLRKPEGFSHKSGMYIFIQCPQISPFEWHPFSLTCG
PKDDYLSVHIRTLGDWSYQLYSLFQEAQVTRLKQYPKIYIDGPYGAASQD
HIKYDIVVMVGLGIGVTPFISILKDFASRVKKPNINHAASGEGRIEKGPL
KAYLYWVTREQSSFNWFMDVMQEIAETNQKQSVVEVFNFLTSVYQEGDAR
SALISIIQSLYHAKNGMDIVSRTPVHTHFARPNWFNIFSNLARRHRGARI
GVFYCGPLALARELERLCTKFSTKTTTRFVFHKENY*
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