Tc03v2_t006520.3

Overview
NameTc03v2_t006520.3
Unique NameTc03v2_t006520.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1371
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productserine/threonine-protein kinase AtPK2/AtPK19, transcript variant X1
NoteSerine/threonine-protein kinase AtPK2/AtPK19
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604517
GenbankXM_018118247.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g006520Tc03v2_g006520Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p006520.3Tc03v2_p006520.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto153038auto153038Theobroma cacaoexon
exon-auto153039auto153039Theobroma cacaoexon
exon-auto153040auto153040Theobroma cacaoexon
exon-auto153041auto153041Theobroma cacaoexon
exon-auto153042auto153042Theobroma cacaoexon
exon-auto153043auto153043Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto153044auto153044Theobroma cacaoCDS
CDS-auto153045auto153045Theobroma cacaoCDS
CDS-auto153046auto153046Theobroma cacaoCDS
CDS-auto153047auto153047Theobroma cacaoCDS
CDS-auto153048auto153048Theobroma cacaoCDS
CDS-auto153049auto153049Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t006520.3 ID=Tc03v2_t006520.3|Name=Tc03v2_t006520.3|organism=Theobroma cacao|type=mRNA|length=1371bp
ATGATATCAACTTCTTCATCCCAAAAGAAAAACCTCCAATCCCTCTTAGC
CACCAACCTCAAGAAACTCACCATAACTCCTCCTCCTCCTCCCAACAATG
ATTTTGACTTCGCCGAGGTTTTTGGCCCTTTAACCCCTCAACATCATCAA
CCCAACCCCACCCAATCACCATCCTCCACGTCATCCCCATCGGCCTTTCT
CGGGGACCCTCAAGTCATCCACACCAGGTCCCACTCTTACGTGGGCCCTT
CTCCTCGTTACACCCTCTCTTCTTCCCTCCCTTTCCAAATCCAAGAAATC
CAGGAAACTGAAACCGAAAATGAAGCTGAAGCTGAAGAAGAAGAAGCAAA
GACCAAATTTGGGCCCGAGGATTTTGAGATCATGAGAGTCGTTGGAAAAG
GAGCTTTTGGGAAAGTTTTTCTAGTGAGGAGAAATGGAAGGAATGATGAG
GAAGGTGATGATGATGGGATTTTTGCTATGAAAGTTATGAGGAAAGATAC
GATCCTTAAAAAGAACCATGTCGATTACATGAAAGCTGAGAGAAATATCC
TCACTAAAGTTGTTCATCCCTTTATTGTTCAGCTTAGATACTCTTTCCAG
ACAAAGTCTAAGCTTTATTTGATCCTGGATTTTGTAAATGGAGGTCATCT
CTTCTTTCACCTATACCGCCAGGGGATTTTCAGTGAGGATCAGGCAAGGT
TTTATACCGCTGAGATTGTATCTGCTGTTTCACATCTTCACAAGTGCGGG
ATCGTTCATCGAGATCTTAAACCCGAAAATATTCTCGTGGATGCTGATGG
GCATGTTATGCTTACTGATTTTGGACTGGCCAAGGAAATTGACGAATCAA
GCAGATCAAATTCAATGTGTGGGACCACAGAGTACATGGCTCCAGAAATT
TTACAGTCCAAAGGCCACAATAAGGATGCAGATTGGTGGAGTATTGGGAT
ACTATTATATGAAATGCTAACTGGACAGCCTCCTTTTACACATGCAAATA
GGCAGAAGCTTCAGCAAAGAATTATCCAAGAGAAAGTGAAACTTCCACCA
TTCCTTAGTACTGAAGCTCACTCTTTACTCAAAGGGCTGCTGCAGAAGGA
ACCATCAAGAAGGTTGGGCAGTGGCCCTAGTGGAGGGGATGAGATAAAAA
AACATAAATGGTTTCGGTCAATCAACTGGAAGAAATTAGAAGCTAGAGAA
ATACAGCCAAAGTTTAAACCAGATGTGAGTGGAAAGGACTGTACAGCCAA
CTTTGACCAGTGCTGGACAACAATGCCGGCAGATGACTCACCAGCCTCCA
CACCAACAGCAGGTGAACATTTTCAGGGGTTTACTTATGTGGCACCCAAC
CCTTGGCTTTCTTCTAAATGA
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protein sequence of Tc03v2_p006520.3

>Tc03v2_p006520.3 ID=Tc03v2_p006520.3|Name=Tc03v2_p006520.3|organism=Theobroma cacao|type=polypeptide|length=457bp
MISTSSSQKKNLQSLLATNLKKLTITPPPPPNNDFDFAEVFGPLTPQHHQ
PNPTQSPSSTSSPSAFLGDPQVIHTRSHSYVGPSPRYTLSSSLPFQIQEI
QETETENEAEAEEEEAKTKFGPEDFEIMRVVGKGAFGKVFLVRRNGRNDE
EGDDDGIFAMKVMRKDTILKKNHVDYMKAERNILTKVVHPFIVQLRYSFQ
TKSKLYLILDFVNGGHLFFHLYRQGIFSEDQARFYTAEIVSAVSHLHKCG
IVHRDLKPENILVDADGHVMLTDFGLAKEIDESSRSNSMCGTTEYMAPEI
LQSKGHNKDADWWSIGILLYEMLTGQPPFTHANRQKLQQRIIQEKVKLPP
FLSTEAHSLLKGLLQKEPSRRLGSGPSGGDEIKKHKWFRSINWKKLEARE
IQPKFKPDVSGKDCTANFDQCWTTMPADDSPASTPTAGEHFQGFTYVAPN
PWLSSK*
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