Tc03v2_t006380.1

Overview
NameTc03v2_t006380.1
Unique NameTc03v2_t006380.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length576
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productvacuolar protein sorting-associated protein 29
NoteVacuolar protein sorting-associated protein 29
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604633
GenbankXM_018117365.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g006380Tc03v2_g006380Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p006380.1Tc03v2_p006380.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto152896auto152896Theobroma cacaoexon
exon-auto152897auto152897Theobroma cacaoexon
exon-auto152898auto152898Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto152899auto152899Theobroma cacaoCDS
CDS-auto152900auto152900Theobroma cacaoCDS
CDS-auto152901auto152901Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t006380.1 ID=Tc03v2_t006380.1|Name=Tc03v2_t006380.1|organism=Theobroma cacao|type=mRNA|length=576bp
ATGGTGCTGGTCTTGGCTCTGGGGGATTTGCATATACCCCATCGGGCAGC
TGATCTCCTTCCAAAGTTCAAGTCCATGCTGGTTCCTGGCAAGATCCAAC
ACATCATTTGCACCGGCAATCTTTGCATAAAAGAAGTTCAAGATTACCTG
AAGTCTCTTTGTCCTGACTTGCATATTACAAGAGGTGAATATGATGAAGA
AACAAGATGTCCCGAGACCAAAACACTAACTATTGGGCAATTCAAGTTGG
GATTATGCCATGGTCATCAGGTTATTCCATGGGGTGACCTAGACTCACTA
GCCATGCTACAGAGGCAGCTGGATGTCGACATACTTGTGACAGGGCACAC
CCACCAGTTCACTGCTTACAAACATGAAGGAGGAGTTGTTATAAACCCAG
GGTCTGCTACAGGTGCATACAGCAGCATCACTTATGATGTGAACCCTAGC
TTTGTCCTCATGGATATTGATGGGCTACGTGTCGTGGTCTATGTCTATGA
ACTCATAGACGGAGAGGTTAAAGTTGACAAAATTGATTTCAAGAAGACAA
CTGCCACAACTCACTCTGCTCATTGA
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protein sequence of Tc03v2_p006380.1

>Tc03v2_p006380.1 ID=Tc03v2_p006380.1|Name=Tc03v2_p006380.1|organism=Theobroma cacao|type=polypeptide|length=192bp
MVLVLALGDLHIPHRAADLLPKFKSMLVPGKIQHIICTGNLCIKEVQDYL
KSLCPDLHITRGEYDEETRCPETKTLTIGQFKLGLCHGHQVIPWGDLDSL
AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPS
FVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTTATTHSAH*
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