Tc03v2_t006250.1

Overview
NameTc03v2_t006250.1
Unique NameTc03v2_t006250.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1665
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 8 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productdelta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial, transcript variant X2
NoteDelta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604617
GenbankXM_007037186.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g006250Tc03v2_g006250Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p006250.1Tc03v2_p006250.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto152491auto152491Theobroma cacaoexon
exon-auto152492auto152492Theobroma cacaoexon
exon-auto152493auto152493Theobroma cacaoexon
exon-auto152494auto152494Theobroma cacaoexon
exon-auto152495auto152495Theobroma cacaoexon
exon-auto152496auto152496Theobroma cacaoexon
exon-auto152497auto152497Theobroma cacaoexon
exon-auto152498auto152498Theobroma cacaoexon
exon-auto152499auto152499Theobroma cacaoexon
exon-auto152500auto152500Theobroma cacaoexon
exon-auto152501auto152501Theobroma cacaoexon
exon-auto152502auto152502Theobroma cacaoexon
exon-auto152503auto152503Theobroma cacaoexon
exon-auto152504auto152504Theobroma cacaoexon
exon-auto152505auto152505Theobroma cacaoexon
exon-auto152506auto152506Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto152507auto152507Theobroma cacaoCDS
CDS-auto152508auto152508Theobroma cacaoCDS
CDS-auto152509auto152509Theobroma cacaoCDS
CDS-auto152510auto152510Theobroma cacaoCDS
CDS-auto152511auto152511Theobroma cacaoCDS
CDS-auto152512auto152512Theobroma cacaoCDS
CDS-auto152513auto152513Theobroma cacaoCDS
CDS-auto152514auto152514Theobroma cacaoCDS
CDS-auto152515auto152515Theobroma cacaoCDS
CDS-auto152516auto152516Theobroma cacaoCDS
CDS-auto152517auto152517Theobroma cacaoCDS
CDS-auto152518auto152518Theobroma cacaoCDS
CDS-auto152519auto152519Theobroma cacaoCDS
CDS-auto152520auto152520Theobroma cacaoCDS
CDS-auto152521auto152521Theobroma cacaoCDS
CDS-auto152522auto152522Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t006250.1 ID=Tc03v2_t006250.1|Name=Tc03v2_t006250.1|organism=Theobroma cacao|type=mRNA|length=1665bp
ATGCATAGAACTGTATTGCAAAGAGAATTGAGAAGCAGAGCTTCCCACAA
GGCTCTAGCTTGGGTCAATTCTTTCAATATTTCTAGGTCTGTTCATTCTT
TGCCATTTACGACTGTCGAAGCTGAAGGGATATCAGGTTCTCAACCTGCT
GAAGTACAAAACTTGGTGCAAGGTAAATGGACAGGATCTGCAGCTTGGAA
CACTCTTTTGGATCCTTTAAATGGGGAACCATTCATTAAAGTTGCAGAAG
TAGATGAAACTGGAGTTCAGCCATTTGTAGAGAGCTTGTCCAAGTGCCCG
AAACATGGTTTACACAATCCCTTCAAATCACCTGAGAGATATCTTTTATA
TGGAGACATATCTGCTAAGGCAGCACACATGCTATCCCTGCCAAAGGTGT
CTGATTTCTTCAATAGGTTAATACAAAGAGTTTCTCCTAAAAGTTACCAG
CAGGCCCTTGGTGAAGTTTACGTAACAAGAAAATTTCTTGAGAATTTCTC
TGGTGATCAGGTTCGTTTCTTAGCAAGGTGTTTTGCAGTACCTGGAAATC
ATATAGGACAGCAGAGTCATGGGTACCGTTGGCCTTATGGTCCAGTTGCA
ATTATTACTCCCTTCAATTTCCCACTGGAGATTCCTGTACTTCAGCTGAT
GGGAGCACTCTATATGGGCAACAAACCCATTCTTAAAGTTGATAGCAAGG
TAAGCATTGTCATGGAGCAAATGATGCGTCTGCTTCATTATTGTGGCTTA
CCAGTAGAAGATGTTGACTTCATAAATTCTGACGGGAAGACCATGAACAA
ACTGCTGATGGAGGCGAATCCACGAATGACCCTCTTTACTGGCAGCTCAA
GAGTAGCAGAGAAATTGGCTGTTGACCTGAAGGGTTGCATAAAATTGGAA
GATGCAGGATTTGATTGGAAAATTCTGGGACCTGATGTTGAAGAGGTTGA
TTATGTTGCATGGGTCTGTGATCAGGATGCATATGCATGCAGTGGTCAGA
AGTGCTCAGCTCAATCAATACTATTCATGCATGAGAATTGGTCTGCAAGT
TCACTCATCCCTAAAATGAAATATCTTGCTGAGAGAAGGAAGTTAGCAGA
TTTAACCATTGGCCCTGTCCTTACTGTCACAACTGAAGCAATGTTGGAGC
ACAAAAAGAAATTGCTTCAAATTTCAGGTTCTAAGTTACTTTTTGGAGGT
GAACCCTTGGAGAATCATTCTATTCCACCCATATATGGTGCCCTGAAGCC
GACTGCCATTTACATTCCTCTTGAAGAAATTTTGAAGGATGACAATTATG
AGCTTGTGACCAAAGAAATTTTTGGGCCATTTCAGATTATAACTGATTAT
AAAAAGGATCAATTACCGATGGTATTGGATGCTTTGGAACGAATGCATGC
GCATCTAACTGCTGCCGTAGTCTCAAATGATCCCATATTCTTGCAGGGCG
TTATTGGCAATACAGTAAATGGGACAACTTATGCTGGATTGAGAGCAAGA
ACTACTGGAGCTCCCCAAAACCATTGGTTTGGACCTGCTGGAGATCCTAG
AGGAGCAGGAATTGGGACACCAGAAGCAATAAAACTGGTTTGGTCATGTC
ACAGGGAAATCATATATGATTTTGGTCCCTTGCCAAGAGATTGGGAAATT
CCACCATCAACTTGA
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protein sequence of Tc03v2_p006250.1

>Tc03v2_p006250.1 ID=Tc03v2_p006250.1|Name=Tc03v2_p006250.1|organism=Theobroma cacao|type=polypeptide|length=555bp
MHRTVLQRELRSRASHKALAWVNSFNISRSVHSLPFTTVEAEGISGSQPA
EVQNLVQGKWTGSAAWNTLLDPLNGEPFIKVAEVDETGVQPFVESLSKCP
KHGLHNPFKSPERYLLYGDISAKAAHMLSLPKVSDFFNRLIQRVSPKSYQ
QALGEVYVTRKFLENFSGDQVRFLARCFAVPGNHIGQQSHGYRWPYGPVA
IITPFNFPLEIPVLQLMGALYMGNKPILKVDSKVSIVMEQMMRLLHYCGL
PVEDVDFINSDGKTMNKLLMEANPRMTLFTGSSRVAEKLAVDLKGCIKLE
DAGFDWKILGPDVEEVDYVAWVCDQDAYACSGQKCSAQSILFMHENWSAS
SLIPKMKYLAERRKLADLTIGPVLTVTTEAMLEHKKKLLQISGSKLLFGG
EPLENHSIPPIYGALKPTAIYIPLEEILKDDNYELVTKEIFGPFQIITDY
KKDQLPMVLDALERMHAHLTAAVVSNDPIFLQGVIGNTVNGTTYAGLRAR
TTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDFGPLPRDWEI
PPST*
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