Tc03v2_t006190.1

Overview
NameTc03v2_t006190.1
Unique NameTc03v2_t006190.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length561
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productisochorismate synthase 2, chloroplastic-like
NoteIsochorismate synthase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID108661413
GenbankXM_018118072.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g006190Tc03v2_g006190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p006190.1Tc03v2_p006190.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto152414auto152414Theobroma cacaoexon
exon-auto152415auto152415Theobroma cacaoexon
exon-auto152416auto152416Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto152417auto152417Theobroma cacaoCDS
CDS-auto152418auto152418Theobroma cacaoCDS
CDS-auto152419auto152419Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t006190.1 ID=Tc03v2_t006190.1|Name=Tc03v2_t006190.1|organism=Theobroma cacao|type=mRNA|length=561bp
ATGGCTGCTACTGGTGCAGGAAGGCACTACGTTGCACGTTTCGTGGATTC
AGAACTGACCAAATGCACTCTCTCTTACTCCCAGCATTCTTCTTGCAGGC
AGTCCATCCAAGTTTTTCACAACAAATTTCAGGTTTGTACACTATCCATG
AATGGGTGCCAGGGTGACCCCAAACTCCCTGTAGGCACCATTGAAACACG
TACACTAGCAGCAGTTCCATCTCCTGCATTGGCCATGGACAGGCTGAATC
TCGCCATTGGAGATTTGAAATACAGCCCACCACCCTTCAGCTCTGGCATA
ATTCGGCTCCAGGTACCAATCCAGCAGCGAATTGAAGCTATCGAGTGGCT
CCATGCTCAAAACCAGATTCTTCCTCGTTGTTTCTTCTCTGGTAGAAGAA
GTAGAGCCAACGGTGCCAATCTCTTGGTAGACATGACCAATGGAAATGGC
CACAACTCCTTCGGACAGAATCTGCTCAGCGTCGCTGGTGTTGGCTCCGC
CGTCTTCTTTCGACAACTTCATCCCTTCTCTTATGATGATTGGAGGTCCA
TTACCAGGTAA
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protein sequence of Tc03v2_p006190.1

>Tc03v2_p006190.1 ID=Tc03v2_p006190.1|Name=Tc03v2_p006190.1|organism=Theobroma cacao|type=polypeptide|length=187bp
MAATGAGRHYVARFVDSELTKCTLSYSQHSSCRQSIQVFHNKFQVCTLSM
NGCQGDPKLPVGTIETRTLAAVPSPALAMDRLNLAIGDLKYSPPPFSSGI
IRLQVPIQQRIEAIEWLHAQNQILPRCFFSGRRSRANGANLLVDMTNGNG
HNSFGQNLLSVAGVGSAVFFRQLHPFSYDDWRSITR*
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