Tc03v2_t005560.1

Overview
NameTc03v2_t005560.1
Unique NameTc03v2_t005560.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length921
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 79 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productserine/threonine-protein phosphatase PP2A catalytic subunit
NoteSerine/threonine-protein phosphatase PP2A catalytic subunit
Cross References
External references for this mRNA
DatabaseAccession
GeneID18507049
GenbankXM_007099692.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g005560Tc03v2_g005560Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p005560.1Tc03v2_p005560.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto151476auto151476Theobroma cacaoexon
exon-auto151477auto151477Theobroma cacaoexon
exon-auto151478auto151478Theobroma cacaoexon
exon-auto151479auto151479Theobroma cacaoexon
exon-auto151480auto151480Theobroma cacaoexon
exon-auto151481auto151481Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto151482auto151482Theobroma cacaoCDS
CDS-auto151483auto151483Theobroma cacaoCDS
CDS-auto151484auto151484Theobroma cacaoCDS
CDS-auto151485auto151485Theobroma cacaoCDS
CDS-auto151486auto151486Theobroma cacaoCDS
CDS-auto151487auto151487Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t005560.1 ID=Tc03v2_t005560.1|Name=Tc03v2_t005560.1|organism=Theobroma cacao|type=mRNA|length=921bp
ATGCCGTCCCATAGCGATCTGGACCGTCAGATCGAGCACTTAATGCAGTG
CAAGCCGCTATCGGAGGCGGAGGTGAAGACGCTGTGCGAGCAGGCACGTG
CGATCCTTGTGGAGGAGTGGAATGTTCAGCCCGTGAAATGTCCCGTCACC
GTCTGCGGCGATATCCACGGCCAGTTCCACGATCTGGTCGAGCTGTTTCG
TATCGGCGGCAACGCTCCCGACACTAATTATCTCTTTATGGGCGATTACG
TAGATCGAGGATATTACTCAGTGGAGACTGTCACTCTTTTAGTTGCTCTG
AAAGTTCGTTATAGAGATAGAATAACTATTTTAAGGGGAAATCATGAGAG
CCGCCAGATAACTCAAGTGTATGGATTTTATGATGAATGCTTGAGAAAAT
ATGGAAATGCTAATGTATGGAAGTATTTCACTGACCTTTTTGATTATTTA
CCTCTGACCGCCCTGATTGAAAGTCAGATTTTCTGCTTGCATGGAGGACT
CTCTCCATCTTTGGATACATTAGATAACATCCGTGCTCTGGACCGTATAC
AGGAGGTTCCTCATGAGGGTCCAATGTGTGATCTCTTATGGTCTGATCCT
GATGACCGATGTGGATGGGGAATATCTCCTCGGGGAGCAGGGTATACCTT
TGGACAGGATATTTCTGGGCAGTTCAACCACACAAATGGGCTCACTCTGA
TTTCTAGAGCTCACCAGCTTGTTATGGAAGGATATAATTGGTCCCAGGAC
AAGAATGTGGTAACAGTGTTTAGTGCACCAAATTACTGCTATCGCTGTGG
AAACATGGCTGCAATACTTGAGATTGGGGAGAATATGGAGCAAAGTTTTC
TTCAGTTTGACCCAGCTCCACGTCAGATTGAGCCTGAGACCACACGCAGA
ACCCCCGACTATTTTTTATAA
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protein sequence of Tc03v2_p005560.1

>Tc03v2_p005560.1 ID=Tc03v2_p005560.1|Name=Tc03v2_p005560.1|organism=Theobroma cacao|type=polypeptide|length=307bp
MPSHSDLDRQIEHLMQCKPLSEAEVKTLCEQARAILVEEWNVQPVKCPVT
VCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVAL
KVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYL
PLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDP
DDRCGWGISPRGAGYTFGQDISGQFNHTNGLTLISRAHQLVMEGYNWSQD
KNVVTVFSAPNYCYRCGNMAAILEIGENMEQSFLQFDPAPRQIEPETTRR
TPDYFL*
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