Tc03v2_t005310.4

Overview
NameTc03v2_t005310.4
Unique NameTc03v2_t005310.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2316
Properties
Property NameValue
NoteProbable cyclic nucleotide-gated ion channel 20, chloroplastic
Model evidenceSupporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productprobable cyclic nucleotide-gated ion channel 20, chloroplastic, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587138
GenbankXM_007010821.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g005310Tc03v2_g005310Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p005310.4Tc03v2_p005310.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto150972auto150972Theobroma cacaoexon
exon-auto150973auto150973Theobroma cacaoexon
exon-auto150974auto150974Theobroma cacaoexon
exon-auto150975auto150975Theobroma cacaoexon
exon-auto150976auto150976Theobroma cacaoexon
exon-auto150977auto150977Theobroma cacaoexon
exon-auto150978auto150978Theobroma cacaoexon
exon-auto150979auto150979Theobroma cacaoexon
exon-auto150980auto150980Theobroma cacaoexon
exon-auto150981auto150981Theobroma cacaoexon
exon-auto150982auto150982Theobroma cacaoexon
exon-auto150983auto150983Theobroma cacaoexon
exon-auto150984auto150984Theobroma cacaoexon
exon-auto150985auto150985Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto150986auto150986Theobroma cacaoCDS
CDS-auto150987auto150987Theobroma cacaoCDS
CDS-auto150988auto150988Theobroma cacaoCDS
CDS-auto150989auto150989Theobroma cacaoCDS
CDS-auto150990auto150990Theobroma cacaoCDS
CDS-auto150991auto150991Theobroma cacaoCDS
CDS-auto150992auto150992Theobroma cacaoCDS
CDS-auto150993auto150993Theobroma cacaoCDS
CDS-auto150994auto150994Theobroma cacaoCDS
CDS-auto150995auto150995Theobroma cacaoCDS
CDS-auto150996auto150996Theobroma cacaoCDS
CDS-auto150997auto150997Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t005310.4 ID=Tc03v2_t005310.4|Name=Tc03v2_t005310.4|organism=Theobroma cacao|type=mRNA|length=2316bp
ATGGCATGTTATGATAAAGATGAGGTTCCAATGCTGTCAGATATTCATCC
TCAACCATCAGAAAATAATCAGGATTCTCAGTTTCAGGCATTGTTTTCTA
GGACTCAGAGTGCTTCAATTTCTATCCCAATGAACTCTATAGAGTCCTAT
GAAAGTACTAATCTTGTCGGACATACTGGCCCCTTGAGGAATGAAAGAAA
AATACCATTTATACAGATGAGTGGTCCGCTATATATTAGCCGTAAGCCTG
AAAATTCTTTTCATCCAAATCAAAGTGTAGCAGGCCATAAAATGGTGGAG
TCTAAGGCAGAAAAATTTCCTTCTTTTAATGGAGTGGATGAAAAAGATTG
GTCAGATAACAACTATGTTGGCAAAAATGAACATTTACTGAGGTCTGGAC
AACTAGGAATGTGCAATGATCCTTACTGCACAACTTGCCCAACATATTAC
AATTTCAAAGCAGATCAAGAGAAAAACTCAAAAGCTTCAGGAATCTTTGA
TACCAAGTTCCATAATGTTCTCTATGGGGATGCCAAAGGTTGGGCTAGGA
GATTGATGTCTTTTCTGAGTTCTTATGTTCCCGGAGTTATGAATCCTCAT
GCTAAAGTTGTTCAGCAATGGAACCAATTTTTTGTCATTTCATGCTTGAT
GGCAGTTTTTATAGACCCATTGTTTTTCTTCTTGTTGTCTGTGCAGAAGG
ATAACAAGTGCATAGTTATTAACCAGCCTGCAACTAAAGCGTTTGTAGTT
TTGAGAAGCATGACTGATTTTATATACCTGCTTAACATGCTCCTTCAGTT
CAGGTTGGCTTATATAGCTCCTGAGTCTAGAGTAGTTGGTGCTGGAGAGT
TGGTTGACCATCCAAAGAAAATTGCTGTCAATTACCTTAGTAGATACTTT
TTTCTTGACTTATTTGTGGTACTCCCACTACCTCAAATCATGATATTGCT
GGTCCTACCAAGATATTTGGGATCATCAGGAGCAAATTTTGCAAAAAATG
TTTTACGTACAGCAATTCTTATTCAGTACCTTCCCAGATTGTATAGGTTT
CTACCTTTCCTTGCTGGTCAGTCTCCAAGTAGCTTTATATTTGAGTCGGC
ATGGGCAAATTTTGTCATAAACCTTCTCACATTTATGCTGTCTGGCCATG
TTGTTGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGT
CTTCGAAATGCCTGCCATGACTCCAACATTTTAAATTGTGAGGAGTTTAT
AGATTGTGGATATGGGCATACTTCTAATCGTACTGAATTGCCAAGTTGGA
AGAACAATGCAAATGCTTCTGCCTGTTTTTCAGAAGATGGATTTCCTTAT
GGAATATATATACAGACAGTCAATCTAACAACAGAACGAAGTATTATTAC
CAGATATGTATATTCATTGTTTTGGGGATTTCAGCAAATCAGTACTCTGG
CTGGAAATCAAACTCCAAGCTATTTTGTTTGGGAAGTTCTTTTTACCATG
GCCATTGTTGGACTGGGCCTCTTGCTTTTTGCTCTTCTGATTGGAAATAT
GCAGAACTTTCTCCAGGCACTTGGACGGAGGAGGTTAGAAATGTCACTAA
GACGTCGTGATGTGGAGCAATGGATGAGCCATCGGCGCTTGCCAGAAGAG
CTTAGAAGGAAAGTACGAGAGGCCGAACGATATAATTGGGCTGCCACAAG
AGGTGTGAATGAAGAAATGCTTTTTGAGAACTTACCCGAAGACCTTCAGA
GAGATATAAGACGCCATCTCTTCAAGTTTGTTAAGAAAGTTCGCATTTTT
GCTCTCATGGATGATCCTATTTTAGATGCCATCTGTGAGAGATTAAGGCA
AAAGACCTATATTAAAGGAAGCAAAGTTTTGTCTCGTGGTAGTCTGATTG
AAAAGATGGTTTTTATTGTGCGTGGGAAAATGGAAAGTGTTGGAGAAAAC
GGAGTCATAGATCCCTTATGTGAAGGGGATGTTTGCGGCGAGGAACTTCT
CACGTGGTGTCTTGAGCATTCTTCAGTAAACAGAGATGGAAAGAAAATTA
GGATTCCTGGACAGAGATTGCTTAGTAACCGAATAGTTAGATGCCTGACA
AATGTAGAAGCATTTTCCCTTCGGGCTGCAGACCTAGAAGAAGTTACCTG
TCTTTTCTCAAGGTTCTTGCGCAATCCTCGTGTTCAAGGAGCCATAAGGT
ATGAATCACGCTATTGGAGAAGCCTTGCTGCTACTCATATTCAAGTAGCA
TGGAGATACAGGAAAAAACGTCTGAACCGTGCTGACACCTCTCAATCTGG
TCAATCTTCAAGGTAG
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protein sequence of Tc03v2_p005310.4

>Tc03v2_p005310.4 ID=Tc03v2_p005310.4|Name=Tc03v2_p005310.4|organism=Theobroma cacao|type=polypeptide|length=772bp
MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPMNSIESY
ESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVE
SKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYY
NFKADQEKNSKASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPH
AKVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINQPATKAFVV
LRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYF
FLDLFVVLPLPQIMILLVLPRYLGSSGANFAKNVLRTAILIQYLPRLYRF
LPFLAGQSPSSFIFESAWANFVINLLTFMLSGHVVGSCWYLFGLQRVNQC
LRNACHDSNILNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY
GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTM
AIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEE
LRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIF
ALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGEN
GVIDPLCEGDVCGEELLTWCLEHSSVNRDGKKIRIPGQRLLSNRIVRCLT
NVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWRSLAATHIQVA
WRYRKKRLNRADTSQSGQSSR*
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