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Properties
Property Name | Value |
Note | Probable cyclic nucleotide-gated ion channel 20, chloroplastic |
Model evidence | Supporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns |
Product | probable cyclic nucleotide-gated ion channel 20, chloroplastic, transcript variant X2 |
Cross References
External references for this mRNA
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Tc03v2_t005310.4 ID=Tc03v2_t005310.4|Name=Tc03v2_t005310.4|organism=Theobroma cacao|type=mRNA|length=2316bp ATGGCATGTTATGATAAAGATGAGGTTCCAATGCTGTCAGATATTCATCC TCAACCATCAGAAAATAATCAGGATTCTCAGTTTCAGGCATTGTTTTCTA GGACTCAGAGTGCTTCAATTTCTATCCCAATGAACTCTATAGAGTCCTAT GAAAGTACTAATCTTGTCGGACATACTGGCCCCTTGAGGAATGAAAGAAA AATACCATTTATACAGATGAGTGGTCCGCTATATATTAGCCGTAAGCCTG AAAATTCTTTTCATCCAAATCAAAGTGTAGCAGGCCATAAAATGGTGGAG TCTAAGGCAGAAAAATTTCCTTCTTTTAATGGAGTGGATGAAAAAGATTG GTCAGATAACAACTATGTTGGCAAAAATGAACATTTACTGAGGTCTGGAC AACTAGGAATGTGCAATGATCCTTACTGCACAACTTGCCCAACATATTAC AATTTCAAAGCAGATCAAGAGAAAAACTCAAAAGCTTCAGGAATCTTTGA TACCAAGTTCCATAATGTTCTCTATGGGGATGCCAAAGGTTGGGCTAGGA GATTGATGTCTTTTCTGAGTTCTTATGTTCCCGGAGTTATGAATCCTCAT GCTAAAGTTGTTCAGCAATGGAACCAATTTTTTGTCATTTCATGCTTGAT GGCAGTTTTTATAGACCCATTGTTTTTCTTCTTGTTGTCTGTGCAGAAGG ATAACAAGTGCATAGTTATTAACCAGCCTGCAACTAAAGCGTTTGTAGTT TTGAGAAGCATGACTGATTTTATATACCTGCTTAACATGCTCCTTCAGTT CAGGTTGGCTTATATAGCTCCTGAGTCTAGAGTAGTTGGTGCTGGAGAGT TGGTTGACCATCCAAAGAAAATTGCTGTCAATTACCTTAGTAGATACTTT TTTCTTGACTTATTTGTGGTACTCCCACTACCTCAAATCATGATATTGCT GGTCCTACCAAGATATTTGGGATCATCAGGAGCAAATTTTGCAAAAAATG TTTTACGTACAGCAATTCTTATTCAGTACCTTCCCAGATTGTATAGGTTT CTACCTTTCCTTGCTGGTCAGTCTCCAAGTAGCTTTATATTTGAGTCGGC ATGGGCAAATTTTGTCATAAACCTTCTCACATTTATGCTGTCTGGCCATG TTGTTGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGT CTTCGAAATGCCTGCCATGACTCCAACATTTTAAATTGTGAGGAGTTTAT AGATTGTGGATATGGGCATACTTCTAATCGTACTGAATTGCCAAGTTGGA AGAACAATGCAAATGCTTCTGCCTGTTTTTCAGAAGATGGATTTCCTTAT GGAATATATATACAGACAGTCAATCTAACAACAGAACGAAGTATTATTAC CAGATATGTATATTCATTGTTTTGGGGATTTCAGCAAATCAGTACTCTGG CTGGAAATCAAACTCCAAGCTATTTTGTTTGGGAAGTTCTTTTTACCATG GCCATTGTTGGACTGGGCCTCTTGCTTTTTGCTCTTCTGATTGGAAATAT GCAGAACTTTCTCCAGGCACTTGGACGGAGGAGGTTAGAAATGTCACTAA GACGTCGTGATGTGGAGCAATGGATGAGCCATCGGCGCTTGCCAGAAGAG CTTAGAAGGAAAGTACGAGAGGCCGAACGATATAATTGGGCTGCCACAAG AGGTGTGAATGAAGAAATGCTTTTTGAGAACTTACCCGAAGACCTTCAGA GAGATATAAGACGCCATCTCTTCAAGTTTGTTAAGAAAGTTCGCATTTTT GCTCTCATGGATGATCCTATTTTAGATGCCATCTGTGAGAGATTAAGGCA AAAGACCTATATTAAAGGAAGCAAAGTTTTGTCTCGTGGTAGTCTGATTG AAAAGATGGTTTTTATTGTGCGTGGGAAAATGGAAAGTGTTGGAGAAAAC GGAGTCATAGATCCCTTATGTGAAGGGGATGTTTGCGGCGAGGAACTTCT CACGTGGTGTCTTGAGCATTCTTCAGTAAACAGAGATGGAAAGAAAATTA GGATTCCTGGACAGAGATTGCTTAGTAACCGAATAGTTAGATGCCTGACA AATGTAGAAGCATTTTCCCTTCGGGCTGCAGACCTAGAAGAAGTTACCTG TCTTTTCTCAAGGTTCTTGCGCAATCCTCGTGTTCAAGGAGCCATAAGGT ATGAATCACGCTATTGGAGAAGCCTTGCTGCTACTCATATTCAAGTAGCA TGGAGATACAGGAAAAAACGTCTGAACCGTGCTGACACCTCTCAATCTGG TCAATCTTCAAGGTAG back to topprotein sequence of Tc03v2_p005310.4 >Tc03v2_p005310.4 ID=Tc03v2_p005310.4|Name=Tc03v2_p005310.4|organism=Theobroma cacao|type=polypeptide|length=772bp
MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPMNSIESY ESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVE SKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYY NFKADQEKNSKASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPH AKVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINQPATKAFVV LRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYF FLDLFVVLPLPQIMILLVLPRYLGSSGANFAKNVLRTAILIQYLPRLYRF LPFLAGQSPSSFIFESAWANFVINLLTFMLSGHVVGSCWYLFGLQRVNQC LRNACHDSNILNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTM AIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEE LRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIF ALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGEN GVIDPLCEGDVCGEELLTWCLEHSSVNRDGKKIRIPGQRLLSNRIVRCLT NVEAFSLRAADLEEVTCLFSRFLRNPRVQGAIRYESRYWRSLAATHIQVA WRYRKKRLNRADTSQSGQSSR* back to top
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