Tc03v2_t005310.1

Overview
NameTc03v2_t005310.1
Unique NameTc03v2_t005310.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2085
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productprobable cyclic nucleotide-gated ion channel 20, chloroplastic, transcript variant X4
NoteProbable cyclic nucleotide-gated ion channel 20, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587138
GenbankXM_007010822.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g005310Tc03v2_g005310Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p005310.1Tc03v2_p005310.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto150892auto150892Theobroma cacaoexon
exon-auto150893auto150893Theobroma cacaoexon
exon-auto150894auto150894Theobroma cacaoexon
exon-auto150895auto150895Theobroma cacaoexon
exon-auto150896auto150896Theobroma cacaoexon
exon-auto150897auto150897Theobroma cacaoexon
exon-auto150898auto150898Theobroma cacaoexon
exon-auto150899auto150899Theobroma cacaoexon
exon-auto150900auto150900Theobroma cacaoexon
exon-auto150901auto150901Theobroma cacaoexon
exon-auto150902auto150902Theobroma cacaoexon
exon-auto150903auto150903Theobroma cacaoexon
exon-auto150904auto150904Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto150905auto150905Theobroma cacaoCDS
CDS-auto150906auto150906Theobroma cacaoCDS
CDS-auto150907auto150907Theobroma cacaoCDS
CDS-auto150908auto150908Theobroma cacaoCDS
CDS-auto150909auto150909Theobroma cacaoCDS
CDS-auto150910auto150910Theobroma cacaoCDS
CDS-auto150911auto150911Theobroma cacaoCDS
CDS-auto150912auto150912Theobroma cacaoCDS
CDS-auto150913auto150913Theobroma cacaoCDS
CDS-auto150914auto150914Theobroma cacaoCDS
CDS-auto150915auto150915Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t005310.1 ID=Tc03v2_t005310.1|Name=Tc03v2_t005310.1|organism=Theobroma cacao|type=mRNA|length=2085bp
ATGGCATGTTATGATAAAGATGAGGTTCCAATGCTGTCAGATATTCATCC
TCAACCATCAGAAAATAATCAGGATTCTCAGTTTCAGGCATTGTTTTCTA
GGACTCAGAGTGCTTCAATTTCTATCCCAATGAACTCTATAGAGTCCTAT
GAAAGTACTAATCTTGTCGGACATACTGGCCCCTTGAGGAATGAAAGAAA
AATACCATTTATACAGATGAGTGGTCCGCTATATATTAGCCGTAAGCCTG
AAAATTCTTTTCATCCAAATCAAAGTGTAGCAGGCCATAAAATGGTGGAG
TCTAAGGCAGAAAAATTTCCTTCTTTTAATGGAGTGGATGAAAAAGATTG
GTCAGATAACAACTATGTTGGCAAAAATGAACATTTACTGAGGTCTGGAC
AACTAGGAATGTGCAATGATCCTTACTGCACAACTTGCCCAACATATTAC
AATTTCAAAGCAGATCAAGAGAAAAACTCAAAAGCTTCAGGAATCTTTGA
TACCAAGTTCCATAATGTTCTCTATGGGGATGCCAAAGGTTGGGCTAGGA
GATTGATGTCTTTTCTGAGTTCTTATGTTCCCGGAGTTATGAATCCTCAT
GCTAAAGTTGTTCAGCAATGGAACCAATTTTTTGTCATTTCATGCTTGAT
GGCAGTTTTTATAGACCCATTGTTTTTCTTCTTGTTGTCTGTGCAGAAGG
ATAACAAGTGCATAGTTATTAACCAGCCTGCAACTAAAGCGTTTGTAGTT
TTGAGAAGCATGACTGATTTTATATACCTGCTTAACATGCTCCTTCAGTT
CAGGTTGGCTTATATAGCTCCTGAGTCTAGAGTAGTTGGTGCTGGAGAGT
TGGTTGACCATCCAAAGAAAATTGCTGTCAATTACCTTAGTAGATACTTT
TTTCTTGACTTATTTGTGGTACTCCCACTACCTCAAATCATGATATTGCT
GGTCCTACCAAGATATTTGGGATCATCAGGAGCAAATTTTGCAAAAAATG
TTTTACGTACAGCAATTCTTATTCAGTACCTTCCCAGATTGTATAGGTTT
CTACCTTTCCTTGCTGGTCAGTCTCCAAGTAGCTTTATATTTGAGTCGGC
ATGGGCAAATTTTGTCATAAACCTTCTCACATTTATGCTGTCTGGCCATG
TTGTTGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGT
CTTCGAAATGCCTGCCATGACTCCAACATTTTAAATTGTGAGGAGTTTAT
AGATTGTGGATATGGGCATACTTCTAATCGTACTGAATTGCCAAGTTGGA
AGAACAATGCAAATGCTTCTGCCTGTTTTTCAGAAGATGGATTTCCTTAT
GGAATATATATACAGACAGTCAATCTAACAACAGAACGAAGTATTATTAC
CAGATATGTATATTCATTGTTTTGGGGATTTCAGCAAATCAGTACTCTGG
CTGGAAATCAAACTCCAAGCTATTTTGTTTGGGAAGTTCTTTTTACCATG
GCCATTGTTGGACTGGGCCTCTTGCTTTTTGCTCTTCTGATTGGAAATAT
GCAGAACTTTCTCCAGGCACTTGGACGGAGGAGGTTAGAAATGTCACTAA
GACGTCGTGATGTGGAGCAATGGATGAGCCATCGGCGCTTGCCAGAAGAG
CTTAGAAGGAAAGTACGAGAGGCCGAACGATATAATTGGGCTGCCACAAG
AGGTGTGAATGAAGAAATGCTTTTTGAGAACTTACCCGAAGACCTTCAGA
GAGATATAAGACGCCATCTCTTCAAGTTTGTTAAGAAAGTTCGCATTTTT
GCTCTCATGGATGATCCTATTTTAGATGCCATCTGTGAGAGATTAAGGCA
AAAGACCTATATTAAAGGAAGCAAAGTTTTGTCTCGTGGTAGTCTGATTG
AAAAGATGGTTTTTATTGTGCGTGGGAAAATGGAAAGTGTTGGAGAAAAC
GGAGTCATAGATCCCTTATGTGAAGGGGATGTTTGCGGCGAGGAACTTCT
CACGTGGTGTCTTGAGCATTCTTCAGTAAACAGAGGTATGAATCACGCTA
TTGGAGAAGCCTTGCTGCTACTCATATTCAAGTAG
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protein sequence of Tc03v2_p005310.1

>Tc03v2_p005310.1 ID=Tc03v2_p005310.1|Name=Tc03v2_p005310.1|organism=Theobroma cacao|type=polypeptide|length=695bp
MACYDKDEVPMLSDIHPQPSENNQDSQFQALFSRTQSASISIPMNSIESY
ESTNLVGHTGPLRNERKIPFIQMSGPLYISRKPENSFHPNQSVAGHKMVE
SKAEKFPSFNGVDEKDWSDNNYVGKNEHLLRSGQLGMCNDPYCTTCPTYY
NFKADQEKNSKASGIFDTKFHNVLYGDAKGWARRLMSFLSSYVPGVMNPH
AKVVQQWNQFFVISCLMAVFIDPLFFFLLSVQKDNKCIVINQPATKAFVV
LRSMTDFIYLLNMLLQFRLAYIAPESRVVGAGELVDHPKKIAVNYLSRYF
FLDLFVVLPLPQIMILLVLPRYLGSSGANFAKNVLRTAILIQYLPRLYRF
LPFLAGQSPSSFIFESAWANFVINLLTFMLSGHVVGSCWYLFGLQRVNQC
LRNACHDSNILNCEEFIDCGYGHTSNRTELPSWKNNANASACFSEDGFPY
GIYIQTVNLTTERSIITRYVYSLFWGFQQISTLAGNQTPSYFVWEVLFTM
AIVGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEE
LRRKVREAERYNWAATRGVNEEMLFENLPEDLQRDIRRHLFKFVKKVRIF
ALMDDPILDAICERLRQKTYIKGSKVLSRGSLIEKMVFIVRGKMESVGEN
GVIDPLCEGDVCGEELLTWCLEHSSVNRGMNHAIGEALLLLIFK*
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