Tc03v2_t004620.1

Overview
NameTc03v2_t004620.1
Unique NameTc03v2_t004620.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1071
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 20 ESTs, 116 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productglutamine synthetase nodule isozyme
NoteGlutamine synthetase cytosolic isozyme 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604409
GenbankXM_007036871.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004620Tc03v2_g004620Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004620.1Tc03v2_p004620.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto149774auto149774Theobroma cacaoexon
exon-auto149775auto149775Theobroma cacaoexon
exon-auto149776auto149776Theobroma cacaoexon
exon-auto149777auto149777Theobroma cacaoexon
exon-auto149778auto149778Theobroma cacaoexon
exon-auto149779auto149779Theobroma cacaoexon
exon-auto149780auto149780Theobroma cacaoexon
exon-auto149781auto149781Theobroma cacaoexon
exon-auto149782auto149782Theobroma cacaoexon
exon-auto149783auto149783Theobroma cacaoexon
exon-auto149784auto149784Theobroma cacaoexon
exon-auto149785auto149785Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto149786auto149786Theobroma cacaoCDS
CDS-auto149787auto149787Theobroma cacaoCDS
CDS-auto149788auto149788Theobroma cacaoCDS
CDS-auto149789auto149789Theobroma cacaoCDS
CDS-auto149790auto149790Theobroma cacaoCDS
CDS-auto149791auto149791Theobroma cacaoCDS
CDS-auto149792auto149792Theobroma cacaoCDS
CDS-auto149793auto149793Theobroma cacaoCDS
CDS-auto149794auto149794Theobroma cacaoCDS
CDS-auto149795auto149795Theobroma cacaoCDS
CDS-auto149796auto149796Theobroma cacaoCDS
CDS-auto149797auto149797Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004620.1 ID=Tc03v2_t004620.1|Name=Tc03v2_t004620.1|organism=Theobroma cacao|type=mRNA|length=1071bp
ATGTCTCTGCTCTCCGATCTTGTCAACCTTAACCTCTCGGAAACCACTGA
GAAGGTCATTGCTGAGTACCTATGGATTGGTGGATCTGGAATGGACCTTA
GAAGCAAAGCCAGGACTCTTCCTGCACCTGTAAGCGATCCTCAAAAGCTG
CCAACATGGAACTATGATGGTTCAAGCACTGGCCAAGCTCCTGGGGAAGA
CAGTGAAGTCATCTTATACCCACAAGCAATATTTAAGGACCCATTCAGGA
GGGGCAACAACATTCTGGTGATGTGTGATGCGTACACTCCTGCTGGTGAA
CCGATTCCGACAAATAAGAGATATAATGCAGCAAAAATATTTAGCCACCC
TAAAGTTGTTGCAGAAGAACCCTGGTATGGAATAGAGCAGGAGTACACTT
TGCTGCAAAAAGAAGTCAAATGGACAATTGGGTGGCCTACTGGTGGTTAT
CCTGGACCCCAGGGGCCCTACTACTGTGGTGTTGGAGCTGACAAGGCCTT
TGGCCGTGACATTGTCGACTCCCATTACAAAGCCTGTCTTTATGCTGGCA
TCAATATTAGTGGCATCAATGGAGAGGTGATGCCTGGCCAGTGGGAATTT
CAAGTTGGCCCTGCTGTTGGCATCTCTGCAGGTGATGAGCTTTGGGTGGC
TCGTTACCTTCTAGAGAGGATTACTGAGATTGCTGGAGTGGTTCTCTCCT
TTGACCCTAAACCCATCCAGGGTGACTGGAATGGGGCTGGCGCACACACA
AACTATAGCACCAAGTCCATGAGAAATGATGGTGGGTATGAAATCATCAA
GAAAGCCATAGAAAATCTCAAACTGAGGCACAAGGAGCACATTGCTGCAT
ATGGGGAAGGCAATGAGCGTCGTTTGACTGGAAGGCATGAAACAGCTGAC
ATTAACACCTTCTCATGGGGAGTGGCAAACCGTGGAGCCTCTGTTAGAGT
TGGCAGAGACACAGAGAAGTGTGGCAAAGGTTACTTTGAGGACAGGAGGC
CGGCTTCAAACATGGATCCATATGTTGTCACTTCCATGATTGCTGAGACA
ACCATCCTCTGGAAACCTTGA
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protein sequence of Tc03v2_p004620.1

>Tc03v2_p004620.1 ID=Tc03v2_p004620.1|Name=Tc03v2_p004620.1|organism=Theobroma cacao|type=polypeptide|length=357bp
MSLLSDLVNLNLSETTEKVIAEYLWIGGSGMDLRSKARTLPAPVSDPQKL
PTWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE
PIPTNKRYNAAKIFSHPKVVAEEPWYGIEQEYTLLQKEVKWTIGWPTGGY
PGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEF
QVGPAVGISAGDELWVARYLLERITEIAGVVLSFDPKPIQGDWNGAGAHT
NYSTKSMRNDGGYEIIKKAIENLKLRHKEHIAAYGEGNERRLTGRHETAD
INTFSWGVANRGASVRVGRDTEKCGKGYFEDRRPASNMDPYVVTSMIAET
TILWKP*
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