Tc03v2_t004550.2

Overview
NameTc03v2_t004550.2
Unique NameTc03v2_t004550.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1776
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 5 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productphenylalanine--tRNA ligase beta subunit, cytoplasmic, transcript variant X2
NotePhenylalanine--tRNA ligase beta subunit, cytoplasmic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604391
GenbankXM_018118042.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004550Tc03v2_g004550Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004550.2Tc03v2_p004550.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto149595auto149595Theobroma cacaoexon
exon-auto149596auto149596Theobroma cacaoexon
exon-auto149597auto149597Theobroma cacaoexon
exon-auto149598auto149598Theobroma cacaoexon
exon-auto149599auto149599Theobroma cacaoexon
exon-auto149600auto149600Theobroma cacaoexon
exon-auto149601auto149601Theobroma cacaoexon
exon-auto149602auto149602Theobroma cacaoexon
exon-auto149603auto149603Theobroma cacaoexon
exon-auto149604auto149604Theobroma cacaoexon
exon-auto149605auto149605Theobroma cacaoexon
exon-auto149606auto149606Theobroma cacaoexon
exon-auto149607auto149607Theobroma cacaoexon
exon-auto149608auto149608Theobroma cacaoexon
exon-auto149609auto149609Theobroma cacaoexon
exon-auto149610auto149610Theobroma cacaoexon
exon-auto149611auto149611Theobroma cacaoexon
exon-auto149612auto149612Theobroma cacaoexon
exon-auto149613auto149613Theobroma cacaoexon
exon-auto149614auto149614Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto149615auto149615Theobroma cacaoCDS
CDS-auto149616auto149616Theobroma cacaoCDS
CDS-auto149617auto149617Theobroma cacaoCDS
CDS-auto149618auto149618Theobroma cacaoCDS
CDS-auto149619auto149619Theobroma cacaoCDS
CDS-auto149620auto149620Theobroma cacaoCDS
CDS-auto149621auto149621Theobroma cacaoCDS
CDS-auto149622auto149622Theobroma cacaoCDS
CDS-auto149623auto149623Theobroma cacaoCDS
CDS-auto149624auto149624Theobroma cacaoCDS
CDS-auto149625auto149625Theobroma cacaoCDS
CDS-auto149626auto149626Theobroma cacaoCDS
CDS-auto149627auto149627Theobroma cacaoCDS
CDS-auto149628auto149628Theobroma cacaoCDS
CDS-auto149629auto149629Theobroma cacaoCDS
CDS-auto149630auto149630Theobroma cacaoCDS
CDS-auto149631auto149631Theobroma cacaoCDS
CDS-auto149632auto149632Theobroma cacaoCDS
CDS-auto149633auto149633Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004550.2 ID=Tc03v2_t004550.2|Name=Tc03v2_t004550.2|organism=Theobroma cacao|type=mRNA|length=1776bp
ATGCCTACTGTCAGCGTAGGGAGGGATCGTCTTTTCGCTGCCCTGGGCAG
ATCTTACACTCAAGAAGAGTTTGAGGATCTATGTTTCAATTTTGGAATTG
AACTTGACGATGTGACAACGGAGAAAGCAATAATTTTGAAAGAGAAGAAC
TTGAAGGACGAAAAACCTAGTCTTGATGATGAAGTCATTTACAAGATTGA
AGTTCCCGCTAACAGGTACGATTTGCTTTGCTTGGAAGGGCTTGCACAAG
CCCTTCGCATTTTCAATGGACAGGAAGGGATACCTAGATACACAGTTGCG
AACGTTAGTAAGGAATCAATGCTCAAAATGCATGTCAAAAGAGAGACATC
TCTAATCCGGCCCTTTGTTGTTTGTGCGGTTTTGAGGGGCATAACTTTTG
ATGAGGCAATCTATAACAGTTTTATTGATCTCCAAGATAAACTGCACCAA
AATATCTGCAGGAAAAGAGCCCTAGTTGCTATTGGAACTCATGACTTGGA
TACATTACAAGGGCCTTTTACATATGAGGCATTGCCACCTCCAAAGATAA
ATTTCGTGCCACTGAAACAGGTGAAGAACTTCAGAGCTGATGAGCTGATG
GAATTTTACAAGTCAGATTTAAAATTGAAGAAGTTCTTGCACATTATTGA
GAAGTCGAAAGTGTTCCCTGTTATATATGACCACAACAGAACTGTTTTGT
CCTTACCACCAATTATTAATAGCGCACACTCTGCAATCACTTTGAAGACA
AAAAATGTCTTCATTGAATGCACAGCCACTGATTTAACAAAGGCCAAAAT
TGTTTTAAATACAATGGTAACGGCATTTTCAGCATATTGTGAGAGGAAAT
TTGAGGTGGAACCAGTTGAAGTGATATCCTTTGATGGAAACTCAAGTGTT
TATCCTGATTTATCAGAGTATAATATGGAAGTCCCACTATCTTATATTAC
TGGTTCAATTGGAGTCCCTTTGGAGGTAGATGAGGTCACTAGTCTATTAA
ACCGAATGCAATTGCATGCTGAACAATCTGGATTGGGTGACAACAATATC
AATGTGTCTGTACCTCCAACCAGAAGTGATATTCTTCACCCATGTGATGT
TATGGAGGATGTTGCTATTGCTTATGGCTACAATAATATTCCAAGGAGAA
AGCTTTCGTCTTTGAAGCCACTTCCCTTAAACCAGCTCAGTGATCTTGTC
AGATATGAGATTGCAATGAACGGTTTTTCGGAGGTGTTGACATGGATTTT
ATGTTCTAAGAAAGAGAATTTTGAAATGTTAAATCGAAAGGATGACAAAT
CAACTGCAGCGATTATTGGAAACCCCCGCTCCTCTGATTTTGAGGTGGTA
CGTACAAGTCTCATGCCTGGCATGTTGAAGACTGTTGGACATAACAAAGA
CCATCCAAAGCCCATAAAGATTTTTGAAGTGGGTGATGTAGTACTTCTGG
ATGAGAAGAAAGATGTCGGTGCATCAAACCGTCGCCTACTTGCTGCACTA
TATTGTGGTGCTAACTCAGGTTTTGAGCTGATTCATAGCCTAGTGGACAG
AATTATGGAAGTAATTGGGACTCCTTTTGTTCAAGTTGGAGATAACACAG
GATACTATATAGAGCTTTCTGATGAACCTGAATTTCTATCGGGTAGGCAA
GCCAAAATAATTTACAAAGGAAGGTGCATTGGCATTTTTGGTATTGTGCA
GCCTGAGGTGTTGAACAATTTTGATATTCCGGATCCATGCTCCTTCGTGG
AACTTGACATGGAGAGCTTTTTGTAG
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protein sequence of Tc03v2_p004550.2

>Tc03v2_p004550.2 ID=Tc03v2_p004550.2|Name=Tc03v2_p004550.2|organism=Theobroma cacao|type=polypeptide|length=592bp
MPTVSVGRDRLFAALGRSYTQEEFEDLCFNFGIELDDVTTEKAIILKEKN
LKDEKPSLDDEVIYKIEVPANRYDLLCLEGLAQALRIFNGQEGIPRYTVA
NVSKESMLKMHVKRETSLIRPFVVCAVLRGITFDEAIYNSFIDLQDKLHQ
NICRKRALVAIGTHDLDTLQGPFTYEALPPPKINFVPLKQVKNFRADELM
EFYKSDLKLKKFLHIIEKSKVFPVIYDHNRTVLSLPPIINSAHSAITLKT
KNVFIECTATDLTKAKIVLNTMVTAFSAYCERKFEVEPVEVISFDGNSSV
YPDLSEYNMEVPLSYITGSIGVPLEVDEVTSLLNRMQLHAEQSGLGDNNI
NVSVPPTRSDILHPCDVMEDVAIAYGYNNIPRRKLSSLKPLPLNQLSDLV
RYEIAMNGFSEVLTWILCSKKENFEMLNRKDDKSTAAIIGNPRSSDFEVV
RTSLMPGMLKTVGHNKDHPKPIKIFEVGDVVLLDEKKDVGASNRRLLAAL
YCGANSGFELIHSLVDRIMEVIGTPFVQVGDNTGYYIELSDEPEFLSGRQ
AKIIYKGRCIGIFGIVQPEVLNNFDIPDPCSFVELDMESFL*
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