Tc03v2_t004550.1

Overview
NameTc03v2_t004550.1
Unique NameTc03v2_t004550.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1776
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productphenylalanine--tRNA ligase beta subunit, cytoplasmic, transcript variant X3
NotePhenylalanine--tRNA ligase beta subunit, cytoplasmic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604391
GenbankXM_018118043.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004550Tc03v2_g004550Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004550.1Tc03v2_p004550.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto149554auto149554Theobroma cacaoexon
exon-auto149555auto149555Theobroma cacaoexon
exon-auto149556auto149556Theobroma cacaoexon
exon-auto149557auto149557Theobroma cacaoexon
exon-auto149558auto149558Theobroma cacaoexon
exon-auto149559auto149559Theobroma cacaoexon
exon-auto149560auto149560Theobroma cacaoexon
exon-auto149561auto149561Theobroma cacaoexon
exon-auto149562auto149562Theobroma cacaoexon
exon-auto149563auto149563Theobroma cacaoexon
exon-auto149564auto149564Theobroma cacaoexon
exon-auto149565auto149565Theobroma cacaoexon
exon-auto149566auto149566Theobroma cacaoexon
exon-auto149567auto149567Theobroma cacaoexon
exon-auto149568auto149568Theobroma cacaoexon
exon-auto149569auto149569Theobroma cacaoexon
exon-auto149570auto149570Theobroma cacaoexon
exon-auto149571auto149571Theobroma cacaoexon
exon-auto149572auto149572Theobroma cacaoexon
exon-auto149573auto149573Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto149574auto149574Theobroma cacaoCDS
CDS-auto149575auto149575Theobroma cacaoCDS
CDS-auto149576auto149576Theobroma cacaoCDS
CDS-auto149577auto149577Theobroma cacaoCDS
CDS-auto149578auto149578Theobroma cacaoCDS
CDS-auto149579auto149579Theobroma cacaoCDS
CDS-auto149580auto149580Theobroma cacaoCDS
CDS-auto149581auto149581Theobroma cacaoCDS
CDS-auto149582auto149582Theobroma cacaoCDS
CDS-auto149583auto149583Theobroma cacaoCDS
CDS-auto149584auto149584Theobroma cacaoCDS
CDS-auto149585auto149585Theobroma cacaoCDS
CDS-auto149586auto149586Theobroma cacaoCDS
CDS-auto149587auto149587Theobroma cacaoCDS
CDS-auto149588auto149588Theobroma cacaoCDS
CDS-auto149589auto149589Theobroma cacaoCDS
CDS-auto149590auto149590Theobroma cacaoCDS
CDS-auto149591auto149591Theobroma cacaoCDS
CDS-auto149592auto149592Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004550.1 ID=Tc03v2_t004550.1|Name=Tc03v2_t004550.1|organism=Theobroma cacao|type=mRNA|length=1776bp
ATGCCTACTGTCAGCGTAGGGAGGGATCGTCTTTTCGCTGCCCTGGGCAG
ATCTTACACTCAAGAAGAGTTTGAGGATCTATGTTTCAATTTTGGAATTG
AACTTGACGATGTGACAACGGAGAAAGCAATAATTTTGAAAGAGAAGAAC
TTGAAGGACGAAAAACCTAGTCTTGATGATGAAGTCATTTACAAGATTGA
AGTTCCCGCTAACAGGTACGATTTGCTTTGCTTGGAAGGGCTTGCACAAG
CCCTTCGCATTTTCAATGGACAGGAAGGGATACCTAGATACACAGTTGCG
AACGTTAGTAAGGAATCAATGCTCAAAATGCATGTCAAAAGAGAGACATC
TCTAATCCGGCCCTTTGTTGTTTGTGCGGTTTTGAGGGGCATAACTTTTG
ATGAGGCAATCTATAACAGTTTTATTGATCTCCAAGATAAACTGCACCAA
AATATCTGCAGGAAAAGAGCCCTAGTTGCTATTGGAACTCATGACTTGGA
TACATTACAAGGGCCTTTTACATATGAGGCATTGCCACCTCCAAAGATAA
ATTTCGTGCCACTGAAACAGGTGAAGAACTTCAGAGCTGATGAGCTGATG
GAATTTTACAAGTCAGATTTAAAATTGAAGAAGTTCTTGCACATTATTGA
GAAGTCGAAAGTGTTCCCTGTTATATATGACCACAACAGAACTGTTTTGT
CCTTACCACCAATTATTAATAGCGCACACTCTGCAATCACTTTGAAGACA
AAAAATGTCTTCATTGAATGCACAGCCACTGATTTAACAAAGGCCAAAAT
TGTTTTAAATACAATGGTAACGGCATTTTCAGCATATTGTGAGAGGAAAT
TTGAGGTGGAACCAGTTGAAGTGATATCCTTTGATGGAAACTCAAGTGTT
TATCCTGATTTATCAGAGTATAATATGGAAGTCCCACTATCTTATATTAC
TGGTTCAATTGGAGTCCCTTTGGAGGTAGATGAGGTCACTAGTCTATTAA
ACCGAATGCAATTGCATGCTGAACAATCTGGATTGGGTGACAACAATATC
AATGTGTCTGTACCTCCAACCAGAAGTGATATTCTTCACCCATGTGATGT
TATGGAGGATGTTGCTATTGCTTATGGCTACAATAATATTCCAAGGAGAA
AGCTTTCGTCTTTGAAGCCACTTCCCTTAAACCAGCTCAGTGATCTTGTC
AGATATGAGATTGCAATGAACGGTTTTTCGGAGGTGTTGACATGGATTTT
ATGTTCTAAGAAAGAGAATTTTGAAATGTTAAATCGAAAGGATGACAAAT
CAACTGCAGCGATTATTGGAAACCCCCGCTCCTCTGATTTTGAGGTGGTA
CGTACAAGTCTCATGCCTGGCATGTTGAAGACTGTTGGACATAACAAAGA
CCATCCAAAGCCCATAAAGATTTTTGAAGTGGGTGATGTAGTACTTCTGG
ATGAGAAGAAAGATGTCGGTGCATCAAACCGTCGCCTACTTGCTGCACTA
TATTGTGGTGCTAACTCAGGTTTTGAGCTGATTCATAGCCTAGTGGACAG
AATTATGGAAGTAATTGGGACTCCTTTTGTTCAAGTTGGAGATAACACAG
GATACTATATAGAGCTTTCTGATGAACCTGAATTTCTATCGGGTAGGCAA
GCCAAAATAATTTACAAAGGAAGGTGCATTGGCATTTTTGGTATTGTGCA
GCCTGAGGTGTTGAACAATTTTGATATTCCGGATCCATGCTCCTTCGTGG
AACTTGACATGGAGAGCTTTTTGTAG
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protein sequence of Tc03v2_p004550.1

>Tc03v2_p004550.1 ID=Tc03v2_p004550.1|Name=Tc03v2_p004550.1|organism=Theobroma cacao|type=polypeptide|length=592bp
MPTVSVGRDRLFAALGRSYTQEEFEDLCFNFGIELDDVTTEKAIILKEKN
LKDEKPSLDDEVIYKIEVPANRYDLLCLEGLAQALRIFNGQEGIPRYTVA
NVSKESMLKMHVKRETSLIRPFVVCAVLRGITFDEAIYNSFIDLQDKLHQ
NICRKRALVAIGTHDLDTLQGPFTYEALPPPKINFVPLKQVKNFRADELM
EFYKSDLKLKKFLHIIEKSKVFPVIYDHNRTVLSLPPIINSAHSAITLKT
KNVFIECTATDLTKAKIVLNTMVTAFSAYCERKFEVEPVEVISFDGNSSV
YPDLSEYNMEVPLSYITGSIGVPLEVDEVTSLLNRMQLHAEQSGLGDNNI
NVSVPPTRSDILHPCDVMEDVAIAYGYNNIPRRKLSSLKPLPLNQLSDLV
RYEIAMNGFSEVLTWILCSKKENFEMLNRKDDKSTAAIIGNPRSSDFEVV
RTSLMPGMLKTVGHNKDHPKPIKIFEVGDVVLLDEKKDVGASNRRLLAAL
YCGANSGFELIHSLVDRIMEVIGTPFVQVGDNTGYYIELSDEPEFLSGRQ
AKIIYKGRCIGIFGIVQPEVLNNFDIPDPCSFVELDMESFL*
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