Tc03v2_t004080.1

Overview
NameTc03v2_t004080.1
Unique NameTc03v2_t004080.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length993
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productprostaglandin E synthase 2, transcript variant X1
NotePutative Glutaredoxin
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604340
GenbankXM_018116800.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g004080Tc03v2_g004080Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p004080.1Tc03v2_p004080.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto148664auto148664Theobroma cacaoexon
exon-auto148665auto148665Theobroma cacaoexon
exon-auto148666auto148666Theobroma cacaoexon
exon-auto148667auto148667Theobroma cacaoexon
exon-auto148668auto148668Theobroma cacaoexon
exon-auto148669auto148669Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto148670auto148670Theobroma cacaoCDS
CDS-auto148671auto148671Theobroma cacaoCDS
CDS-auto148672auto148672Theobroma cacaoCDS
CDS-auto148673auto148673Theobroma cacaoCDS
CDS-auto148674auto148674Theobroma cacaoCDS
CDS-auto148675auto148675Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t004080.1 ID=Tc03v2_t004080.1|Name=Tc03v2_t004080.1|organism=Theobroma cacao|type=mRNA|length=993bp
ATGAGAGGGGCCTCCTCATTCACCTCCTCCGTCCTCTCCAGGACCCTCGC
CACCGTCCACGACAGGGGAGCAGCCGCCGCCCTCCAGCCTCGTTCCCTCC
GGGTAGCGCTCTTTTGCAGCAGCAGAACCAACAATTCCTACACTCGCTTG
CGTTGGTTCTCTCCGGTCCTCACCTCCTTTTCCAGAAGCTCGGCTCGAGC
CGTCTCTCTTGGTCTTGCCGGCGCTGTCGCCTCCGTTGCCACCGCTGCTT
CTGTCTACGCCAAGGAGCCGCCACCAGCTGAGATCATGCCCAAGGACGTC
GTTCTTTATCAGTATGAGGCCTGTCCTTTTTGCAATAAAGTTAAAGCATT
CTTGGACTACTATGACATACCATACAAAGTTGTGGAAGTCAATCCCATTA
GTAAGAAAGAAATCAAGTGGTCTGATTACAAGAAGGTGCCTATACTCATG
GTCAATGGTGAACAGCTGGTGGACTCATCAGCTATTATTGACAAATTGAG
TGAAAAAGTCCTTCCAAAGAAAATGATTAATTCAGGTGCTAATGAAGATG
AAGAGACAAAGTGGCGAAGGTGGGTTGACAACCACTTGGTGCATGTCTTA
TCTCCAAACATATACCGCAACATTTCTGAGGCTCTTGAGTCTTTTGACTA
CATCACTAGCAATGGTAATTTTAGCTTCACTGAGAAGATAACAGTGAAAT
ATGCTGGAGCTGCTGCTATGTATTTTGTATCCAAGAATCTAAAGAAGAAA
TATAACATCACTGATGAACGTGCTGCCTTATATGAAGCAGCAGAAACATG
GGTGGATGCTCTAAATGGTCGGAATTTTCTTGGGGGATCTAAGCCTAATC
TAGCTGACCTTGCCGTCTTTGGGGTGCTAAGACCCATCCGTTACCTGAGG
TCTGGTAGAGATATGGTGGAACACACTCGAATTGGAGAGTGGTACTCTAG
AATGGAGGAAGTGGTTGGAGAGTCATCAAGGATCAAGGCTTAA
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protein sequence of Tc03v2_p004080.1

>Tc03v2_p004080.1 ID=Tc03v2_p004080.1|Name=Tc03v2_p004080.1|organism=Theobroma cacao|type=polypeptide|length=331bp
MRGASSFTSSVLSRTLATVHDRGAAAALQPRSLRVALFCSSRTNNSYTRL
RWFSPVLTSFSRSSARAVSLGLAGAVASVATAASVYAKEPPPAEIMPKDV
VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPISKKEIKWSDYKKVPILM
VNGEQLVDSSAIIDKLSEKVLPKKMINSGANEDEETKWRRWVDNHLVHVL
SPNIYRNISEALESFDYITSNGNFSFTEKITVKYAGAAAMYFVSKNLKKK
YNITDERAALYEAAETWVDALNGRNFLGGSKPNLADLAVFGVLRPIRYLR
SGRDMVEHTRIGEWYSRMEEVVGESSRIKA*
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