Tc03v2_t003260.2

Overview
NameTc03v2_t003260.2
Unique NameTc03v2_t003260.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3582
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ProductDExH-box ATP-dependent RNA helicase DExH3, transcript variant X1
NoteDExH-box ATP-dependent RNA helicase DExH3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604229
GenbankXM_018118051.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g003260Tc03v2_g003260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p003260.2Tc03v2_p003260.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto147149auto147149Theobroma cacaoexon
exon-auto147150auto147150Theobroma cacaoexon
exon-auto147151auto147151Theobroma cacaoexon
exon-auto147152auto147152Theobroma cacaoexon
exon-auto147153auto147153Theobroma cacaoexon
exon-auto147154auto147154Theobroma cacaoexon
exon-auto147155auto147155Theobroma cacaoexon
exon-auto147156auto147156Theobroma cacaoexon
exon-auto147157auto147157Theobroma cacaoexon
exon-auto147158auto147158Theobroma cacaoexon
exon-auto147159auto147159Theobroma cacaoexon
exon-auto147160auto147160Theobroma cacaoexon
exon-auto147161auto147161Theobroma cacaoexon
exon-auto147162auto147162Theobroma cacaoexon
exon-auto147163auto147163Theobroma cacaoexon
exon-auto147164auto147164Theobroma cacaoexon
exon-auto147165auto147165Theobroma cacaoexon
exon-auto147166auto147166Theobroma cacaoexon
exon-auto147167auto147167Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto147168auto147168Theobroma cacaoCDS
CDS-auto147169auto147169Theobroma cacaoCDS
CDS-auto147170auto147170Theobroma cacaoCDS
CDS-auto147171auto147171Theobroma cacaoCDS
CDS-auto147172auto147172Theobroma cacaoCDS
CDS-auto147173auto147173Theobroma cacaoCDS
CDS-auto147174auto147174Theobroma cacaoCDS
CDS-auto147175auto147175Theobroma cacaoCDS
CDS-auto147176auto147176Theobroma cacaoCDS
CDS-auto147177auto147177Theobroma cacaoCDS
CDS-auto147178auto147178Theobroma cacaoCDS
CDS-auto147179auto147179Theobroma cacaoCDS
CDS-auto147180auto147180Theobroma cacaoCDS
CDS-auto147181auto147181Theobroma cacaoCDS
CDS-auto147182auto147182Theobroma cacaoCDS
CDS-auto147183auto147183Theobroma cacaoCDS
CDS-auto147184auto147184Theobroma cacaoCDS
CDS-auto147185auto147185Theobroma cacaoCDS
CDS-auto147186auto147186Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t003260.2 ID=Tc03v2_t003260.2|Name=Tc03v2_t003260.2|organism=Theobroma cacao|type=mRNA|length=3582bp
ATGCCCTGTTACGCAGCCATATTTCAGGGCTATCTCAGGACAACCGCCAT
GTCTCTGAGACCCAATTCCCTCCAACTCAACAACACCCCTAAAACCCTTT
TAAAGCCTTGTTTCTTCTCCTTTCTGTCCAGGAAACCCCCTGCTTCTTTC
AGGCGTTTGCATTTGAGGCATGGCCTCGTCACGTGCTCTGGGTATCGGGC
TGCTACTGCTTCTTCCCGGACTCCTGGCTTGGATTGGAGGAACATTGCCT
TGCCTTCTTTGCAGCAGCAGCAAAGCTCTAATTACGGTCGCTATGCTTAC
CAGGATGTTTCCAGTGATGACTCGGACCATGAATTCGGTTCTACACAGTC
TCAAATGGCTGCTTCTACCCTTGATAATATTGATGAATGGAGATGGAAAT
TGACTATGCTTCTTCGCAACAAAGATGAGCAAGAGGTGGTGTCAAGGGAG
AGAAAGGACAGGCGTGACTTTGAGCAACTTTCAGCTCTAGCAACCAGGAT
GGGTTTGCACAGCTGTCAATATGCAAAAGTAGTTGTTTTTAGTAAACTTC
CACTGCCAAATTATAGATCTGATCTGGATGATAAGCGGCCACAAAGAGAG
GTGATCTTACCTTTTGGCCTGCAAAGAGATGTAGATCTTCACCTTAAAGC
TTACCTTACTCGTAAGGCTATAAACAGTGCTAACTTTTCAGATAAACCTT
TGTCAAGATCAAGCTGTGGCGGAAGAATTGCTGCGGATGAAGTACCTATT
GAGCAGGAAGAGCCCTTTACAAAGATTAGTGTTGTCATGGAGAGAATTCT
TCTGCGGAGAAGTTTGCAGCTACGTAACAGGCAACAAGAATGGCAGGAGT
CTCCTGAAGGACTAAAGATGTTTGAATTTCGAAGAAGCCTGCCAGCATAT
AAATTGAGGGATGCTTTGCTAAGTGTCATCTCACAGAATCAGGTGGTTGT
TGTCTCTGGTGAAACTGGTTGTGGTAAAACCACACAACTTCCTCAGTACA
TATTAGAATCTGAGATAGAAGCTGCTCGTGGAGCTTCCTGTAGTATCATA
TGTACTCAGCCTAGAAGGATATCTGCTATGGCTGTTTCTGAAAGAGTTGC
TGCAGAAAGAGGGGAGAAATTGGGAGAATCTGTTGGTTATAAGGTACGCC
TTGAGGGAATGAAAGGGAGAGACACCCGCCTTCTCTTTTGTACCACTGGC
ATTTTACTGAGGCGACTACTTGTTGACAGAGATTTGAGAGGTGTAAGTCA
TGTTATTGTTGATGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTTC
TTATTGTCTTGAAAGATCTCCTTCCTCGTAGGCCAGAGTTGAGGTTGATT
TTGATGAGTGCAACCTTAAATGCAGAGCTCTTTTCTTCTTACTTTGGTGG
TGCCCCGACAATCCATATTCCTGGTTTTACATACCCTGTCCGAGAACATT
TTCTGGAGAATATTCTAGAGGTGACTGGATACAGGTTGACTCCATATAAT
CAAATTGATGATTATGGTCAAGAAAAGATGTGGAAAATGCAGAAACAGGC
CCAATCTCTCAGAAAGAGGAAGAGCCAGCTAACTTCTGCAGTTGAGGATG
CACTTGAAAGGGCCGACTTTAGGGGGTATAGTTTGCGGACTCGGGAGTCT
TTATCTTGTTGGAATCCTGACTCAATTGGTTTCAATCTAATTGAGCATGT
TCTTTGCCACATCATAAAGAAAGAGAGGCCTGGTGCTGTTTTGGTTTTCA
TGACTGGTTGGGATGACATAAACTCTCTAAAAGATCAGCTCCAGGTTCAT
CCTCTCCTAGGGGACCCTGGCAAGGTGTTGTTGCTTGCATGTCATGGTTC
CATGCCTAGCTCTGAGCAGAGGTTAATATTTGAAAAGCCCAAAGATGGAG
TGAGAAAAATAGTTCTAGCTACTAATATGGCTGAGACTAGCATCACCATC
AATGATGTGGTTTTTGTGGTTGATTGTGGAAAGGCAAAAGAAACATCCTA
TGATGCACTGAATAATACTCCTTGTTTGCTTCCATCCTGGATCTCAAAGG
CTGCTGCCCGGCAAAGAAGGGGAAGAGCTGGCCGTGTTCAGCCAGGCGAG
TGTTACCATCTCTATCCCAAATGCGTGTATGATACTTTTGCTGATTATCA
ACTGCCAGAGCTTTTAAGGACACCACTACAGTCTCTATGTTTGCAAATAA
AAAGTCTAGAACTTGGAAGTATCACAGAGTTTCTTTCTAGGGCATTGCAG
CCTCCAGAACTTCTGTCGGTGCAAAATGCTGTTGAATATCTGAAGATTAT
TGGAGCTTTAGATGAGAATGAGAACTTAACGGTGCTAGGACGTAACTTGT
CAATGCTTCCGGTTGAGCCTAAACTTGGGAAAATGCTGATATTGGGGGCT
ATTTTTAACTGTTTAGATCCAATAATGACTGTTGTTGCCGGGCTCAGTGT
CAGGGATCCATTTCTGATGCCATTTGACAAGAAGGATCTTGCTGAATCGG
CAAAAGCGCAGTTCTCAGGCCAGGAGTACAGTGATCATATTGCACTTGTC
CGAGCCTATGAGGGCTGGAAAGAAGCTGAAAGAGAGCAGTCTGGTTATGA
GTATTGTTGGAAGAATTTTCTTTCTGCACAAACTCTCAAGGCCATTGACT
CTTTACGAAAGCAGTTCTTTTATTTGCTCAAGGATACTGGTCTAGTTGAT
CAAAATATAGAAAACTGCAATAAATGGAGCTACGATGAGCATCTCATACG
GGCAGTCATTTGTGCTGGATTGTTTCCTGGGATATGCTCTGTTGTGAACA
AAGAGAAGTCAATTTCACTGAAAACAATGGAGGATGGACAGGTTCTTCTG
TACTCGAATTCTGTAAATGCTGGGGTACCCAAAATTCCATACCCATGGCT
AGTTTTCAATGAAAAGGTAAAAGTGAATTCAGTATTTCTCCGTGATTCAA
CTGGTGTTTCCGATTCTGTGCTGCTTTTATTTGGAGGGAACATTTCTAGA
GGTGGACTAGATGGACATCTAAAAATGTTGGGAGGATATTTGGAGTTTTT
CATGAAACCTGCTTTAGCTGATACATATTTAAGCTTGAAGAGAGAGCTTG
AGGAACTTATTCAGAAGAAACTTTTGAACCCTACGTTAGATATGCCGTCA
AGCAGTGAGCTGCTCTCTGCAGTAAGGTTGCTGGTCTCAGAAGACCAATG
TGAAGGCAGATTTGTTTTTGGCCGTCAGTTGCCAGTATCCTCAAAGAAGA
CGGTTAAAGAGAAAATACCAGGTATAGGTGGGGGTGATAATTCCAAGAGT
CAGCTGCAAACAGTGCTTGCCAGGGCTGGACATGGAGCTCCCATCTACAA
GACAAAACAGCTAAAAAATAACCAGTTTCGCTCTACTGTTATCTTTAATG
GGCTGGATTTTATGGGGCAGCCTTGCAGCAATAAGAAACTTGCAGAAAAG
GATGCAGCTGCTCAGGCTCTGCTGTGGTTGAGGGGTGAAGACCATTTTTC
TTCCAGAGATGTTGAACATGCATCAGTGCTTTTGAAAAAGAGCAAAAAGA
GAACTTCAGTCCATGCTACTAAGTGGAGTTAA
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protein sequence of Tc03v2_p003260.2

>Tc03v2_p003260.2 ID=Tc03v2_p003260.2|Name=Tc03v2_p003260.2|organism=Theobroma cacao|type=polypeptide|length=1194bp
MPCYAAIFQGYLRTTAMSLRPNSLQLNNTPKTLLKPCFFSFLSRKPPASF
RRLHLRHGLVTCSGYRAATASSRTPGLDWRNIALPSLQQQQSSNYGRYAY
QDVSSDDSDHEFGSTQSQMAASTLDNIDEWRWKLTMLLRNKDEQEVVSRE
RKDRRDFEQLSALATRMGLHSCQYAKVVVFSKLPLPNYRSDLDDKRPQRE
VILPFGLQRDVDLHLKAYLTRKAINSANFSDKPLSRSSCGGRIAADEVPI
EQEEPFTKISVVMERILLRRSLQLRNRQQEWQESPEGLKMFEFRRSLPAY
KLRDALLSVISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSII
CTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTG
ILLRRLLVDRDLRGVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLI
LMSATLNAELFSSYFGGAPTIHIPGFTYPVREHFLENILEVTGYRLTPYN
QIDDYGQEKMWKMQKQAQSLRKRKSQLTSAVEDALERADFRGYSLRTRES
LSCWNPDSIGFNLIEHVLCHIIKKERPGAVLVFMTGWDDINSLKDQLQVH
PLLGDPGKVLLLACHGSMPSSEQRLIFEKPKDGVRKIVLATNMAETSITI
NDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGE
CYHLYPKCVYDTFADYQLPELLRTPLQSLCLQIKSLELGSITEFLSRALQ
PPELLSVQNAVEYLKIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGA
IFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGQEYSDHIALV
RAYEGWKEAEREQSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDTGLVD
QNIENCNKWSYDEHLIRAVICAGLFPGICSVVNKEKSISLKTMEDGQVLL
YSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGNISR
GGLDGHLKMLGGYLEFFMKPALADTYLSLKRELEELIQKKLLNPTLDMPS
SSELLSAVRLLVSEDQCEGRFVFGRQLPVSSKKTVKEKIPGIGGGDNSKS
QLQTVLARAGHGAPIYKTKQLKNNQFRSTVIFNGLDFMGQPCSNKKLAEK
DAAAQALLWLRGEDHFSSRDVEHASVLLKKSKKRTSVHATKWS*
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