Tc03v2_t002390.1

Overview
NameTc03v2_t002390.1
Unique NameTc03v2_t002390.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1764
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 10 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productserine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
NoteSerine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
Cross References
External references for this mRNA
DatabaseAccession
GeneID18604106
GenbankXM_007036440.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g002390Tc03v2_g002390Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p002390.1Tc03v2_p002390.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto145619auto145619Theobroma cacaoexon
exon-auto145620auto145620Theobroma cacaoexon
exon-auto145621auto145621Theobroma cacaoexon
exon-auto145622auto145622Theobroma cacaoexon
exon-auto145623auto145623Theobroma cacaoexon
exon-auto145624auto145624Theobroma cacaoexon
exon-auto145625auto145625Theobroma cacaoexon
exon-auto145626auto145626Theobroma cacaoexon
exon-auto145627auto145627Theobroma cacaoexon
exon-auto145628auto145628Theobroma cacaoexon
exon-auto145629auto145629Theobroma cacaoexon
exon-auto145630auto145630Theobroma cacaoexon
exon-auto145631auto145631Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto145632auto145632Theobroma cacaoCDS
CDS-auto145633auto145633Theobroma cacaoCDS
CDS-auto145634auto145634Theobroma cacaoCDS
CDS-auto145635auto145635Theobroma cacaoCDS
CDS-auto145636auto145636Theobroma cacaoCDS
CDS-auto145637auto145637Theobroma cacaoCDS
CDS-auto145638auto145638Theobroma cacaoCDS
CDS-auto145639auto145639Theobroma cacaoCDS
CDS-auto145640auto145640Theobroma cacaoCDS
CDS-auto145641auto145641Theobroma cacaoCDS
CDS-auto145642auto145642Theobroma cacaoCDS
CDS-auto145643auto145643Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t002390.1 ID=Tc03v2_t002390.1|Name=Tc03v2_t002390.1|organism=Theobroma cacao|type=mRNA|length=1764bp
ATGGCAATGATTGATGAGCCTTTGTATCCCATCGCGGTGTTGATCGATGA
GCTCAAGAATGAAGACATCCAGCTGCGTTTGAACTCGATCCGTAGGCTCT
CTACCATTGCACGTGCGCTAGGGGAAGAAAGGACACGGAAGGAATTGATT
CCATTTCTGAGTGAGAACAATGACGATGATGATGAAGTTCTCCTTGCCAT
GGCTGAAGAATTGGGGGTTTTTATTCCTTATGTTGGAGGTCTGGAATATG
CTAATGTTTTGTTACCCCCATTGGAGACTCTTTGCACTGTTGAGGAAACT
TGTGTTAGGGATAAGGCTGTGGAGTCGTTGTGTAGAATTGGTGCTCAGAT
GAGGGAGCAGGACTTGGTTGAGTCATTTATCCCACTAGTGAAGAGATTGG
CTGCTGGTGAGTGGTTTACAGCTCGAGTTTCCTCGTGTGGCTTGTTTCAT
ATTGCATACCCAAGTGCTCCGGATGCATTAAAAACTGAACTGAGAGCGAT
ATACAGTCAGCTTTGCCAAGATGACATGCCCATGGTTAGGAGATCTGCTG
CAACAAATCTAGGAAAATTTGCTGCCACTGTAGAAGCACCTCATTTGAAG
GTGGACATCATGTCTATGTTTGATGATCTGACACAGGATGATCAAGATTC
TGTTCGATTATTGGCCGTTGAGGGTTGTGCAGCTCTTGGCAAGTTGTTGG
AATCCCAAGATTGTGTGGCACATATTCTCCCTGTCATAGTTAATTTCTCA
CAGGATAAGTCTTGGCGTGTCCGATACATGGTTGCAAATCAATTGTATGA
GCTGTGTGAAGCTGTTGGTCCAGAGCCTACTAGGTCGGACCTAGTTCCTG
CATATGTTCGCTTACTTCGTGATAATGAAGCTGAAGTACGAATAGCTGCT
GCTGGAAAAGTAACTAAGTTTTGCCGAATTCTGAGTCCAGAACTAGCAAT
TCAGCATATTCTTCCTTGTGTCAAGGAACTATCAACAGATTCATCCCAGC
ATGTTCGTTCTGCTTTGGCTTCAGTTATAATGGGAATGGCACCTGTTTTA
GGGAAGGATGCGACCATAGAGCAATTGCTTCCCATATTTCTTTCTCTTCT
GAAAGATGAATTTCCGGATGTCAGACTGAATATCATTAGCAAGCTCGATC
AAGTTAACCAGGTGATTGGAATTGATCTGCTGTCCCAGTCCCTATTGCCA
GCAATAGTGGAGCTTGCAGAGGATAGGCACTGGAGGGTTCGGCTTGCAAT
AATAGAATACATACCTTTATTGGCAAGTCAGTTGGGTGTTGGCTTTTTCG
ATGACAAACTTGGTGCACTCTGCATGCAATGGTTAAAAGATAAGGTATAT
TCGATTCGTGATGCTGCTGCTAATAATGTGAAGCGCCTTGCAGAAGAATT
TGGACCACAATGGGCAATGCAGCACATAGTTCCTCAGGTTTTGGACATGA
TTAACAACCCTCATTATCTGTATCGGATGACCATTTTACATGCAATTTCT
CTACTTGCCCCTGTTATGGGCCCAGAGATTATTTGTTCAAATCTTCTGCC
TTTGGTTATTAATGCTTCAAAAGATAGGGTACCTAACATCAAATTTAATG
TTGCCAAGGTGTTGCAGTCACTAATTCCTATTGTTGATCAATCTGTGGTG
GAGAAGACAATCCGGCCATGCTTGGTTGAATTGAGCGAGGACCCCGATGT
TGATGTCAGGTTTTTCGCAGGCCAAGCCCTAGAATCAAGTGATCAGGTCA
TGATGTCTAGCTAG
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protein sequence of Tc03v2_p002390.1

>Tc03v2_p002390.1 ID=Tc03v2_p002390.1|Name=Tc03v2_p002390.1|organism=Theobroma cacao|type=polypeptide|length=588bp
MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELI
PFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEET
CVRDKAVESLCRIGAQMREQDLVESFIPLVKRLAAGEWFTARVSSCGLFH
IAYPSAPDALKTELRAIYSQLCQDDMPMVRRSAATNLGKFAATVEAPHLK
VDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLESQDCVAHILPVIVNFS
QDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILSPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVL
GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP
AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY
SIRDAAANNVKRLAEEFGPQWAMQHIVPQVLDMINNPHYLYRMTILHAIS
LLAPVMGPEIICSNLLPLVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV
EKTIRPCLVELSEDPDVDVRFFAGQALESSDQVMMSS*
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