Tc03v2_t001170.2

Overview
NameTc03v2_t001170.2
Unique NameTc03v2_t001170.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1539
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Productserine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform, transcript variant X3
NoteSerine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603938
GenbankXM_018118184.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g001170Tc03v2_g001170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p001170.2Tc03v2_p001170.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto143140auto143140Theobroma cacaoexon
exon-auto143141auto143141Theobroma cacaoexon
exon-auto143142auto143142Theobroma cacaoexon
exon-auto143143auto143143Theobroma cacaoexon
exon-auto143144auto143144Theobroma cacaoexon
exon-auto143145auto143145Theobroma cacaoexon
exon-auto143146auto143146Theobroma cacaoexon
exon-auto143147auto143147Theobroma cacaoexon
exon-auto143148auto143148Theobroma cacaoexon
exon-auto143149auto143149Theobroma cacaoexon
exon-auto143150auto143150Theobroma cacaoexon
exon-auto143151auto143151Theobroma cacaoexon
exon-auto143152auto143152Theobroma cacaoexon
exon-auto143153auto143153Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto143154auto143154Theobroma cacaoCDS
CDS-auto143155auto143155Theobroma cacaoCDS
CDS-auto143156auto143156Theobroma cacaoCDS
CDS-auto143157auto143157Theobroma cacaoCDS
CDS-auto143158auto143158Theobroma cacaoCDS
CDS-auto143159auto143159Theobroma cacaoCDS
CDS-auto143160auto143160Theobroma cacaoCDS
CDS-auto143161auto143161Theobroma cacaoCDS
CDS-auto143162auto143162Theobroma cacaoCDS
CDS-auto143163auto143163Theobroma cacaoCDS
CDS-auto143164auto143164Theobroma cacaoCDS
CDS-auto143165auto143165Theobroma cacaoCDS
CDS-auto143166auto143166Theobroma cacaoCDS
CDS-auto143167auto143167Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t001170.2 ID=Tc03v2_t001170.2|Name=Tc03v2_t001170.2|organism=Theobroma cacao|type=mRNA|length=1539bp
ATGAATTTGATGAGCACGCGCCAGCCTTCCACTCGCGCTTCTCCTCCGGC
TCCTCTGGATTGGAAGTTCTCTCAAGTCTTCGGCGAAAGAAGCGCCGGCG
AAGATGTTCAAGATGTTGATAGAATATCGGCGGTTGAATTTGAGAAGAGC
GGTGATTACCTTGCTGTTGGAGATCGAGGCGGCCGGGTTGTAATATTCGA
GAGAAAGGACGGGAAAGCTACACCGGACGAGCACTATTCCAGAAGTCAGC
TGGAGCGGTTGGATTTTGTCTCTTTAGACCATCCTGAATATCAATATAAG
ACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGCTTGGA
GATTGAAGAGAAAATAAACAAAGTAAAATGGTGTACAACACCCAATGGGT
CACTCTTTATCCTTTCAACGAATGATAAGACAATTAAATTGTGGAAGGTA
AAGGATCGAAAGGTGAAGAAGGCAAAGGAAGTGGATCCTCATCAATTTGT
CTCTTCAGAAAATTCTCTTCTGGCTGAAAGGAGTTTTGTGAGTGAGCAAG
ACATACCATCTTTTACTAATGGCAATAACCTAGAGTGGAAAGAGAATGTG
GCTAACAACACATTCGCATCTCAAGAATTGCATGCTAAGATTGGTAACAA
TGAAGACGCCACATATGCAAGATGTAGAAGGGTCTATGCTCATGCTCATG
ATTTTAATATCAATTCAATTTCAAATAATAGTGACGGCGAGACATTTATA
TCTGCAGATGATCTTAGGATAAACTTGTGGAACCTTGAAATTAGTAATCA
GTCATTTAATATCATTGACATGAAGCCATTAAATATGGAGGATCTTACTG
AGGTCATCACGTCAGCTGAATTCCATCCAATTCATTGTAACCTGCTTGCA
TATGGCAGCTCAAGAGGTTTTATTCGCCTTGTTGACATGCGACAATCAGC
ATTATGTGATTACAGTGCTAGAATATTGCAGGATGCAGAATGTCAAGGGT
CAAGATCATTCTTTACTGAGATTGTTGCCTCTATATCCGATATAAAGTTT
TCAGTTGATGGGCGGCACATCTTAAGCCGTGACTACATGGACCTTAAGCT
GTGGGATATAAACATGGATTCTTCACCAGTTGCAACATTTAAGATTCATG
AACATCTACGCCCAAAGTTATGCGATTTGTATAATAATGACTCCATATTT
GATAAATTTGAGTGCTGCCTCAGTGGAGATGGACTTCATTTTGCAACTGG
ATCTTATAGCAATCTCTTACGTATCTTCTCTCATGGTGTTGGAAGTGAAG
AGGGGAGTACAGTAGAAGCTAGCAAAAATCCAAACAGGAAGCCCCTTCAG
AGGGCAAGAAGATCATCCTTAAGTAACCTTACGCGCGGGTTTCACAAGCA
AGCAGGGCATGAAAACACAAGCCTTGGTAATGAGTTTTCCTGGTCCTCAA
GTTCTAAGCTGCAACATGTCGCTTGGCACCCATGTGCAAACTTGATTGCT
TGTGCTTCTGGAAATAGCTTGTTTTTCTACTATGCGTAG
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protein sequence of Tc03v2_p001170.2

>Tc03v2_p001170.2 ID=Tc03v2_p001170.2|Name=Tc03v2_p001170.2|organism=Theobroma cacao|type=polypeptide|length=513bp
MNLMSTRQPSTRASPPAPLDWKFSQVFGERSAGEDVQDVDRISAVEFEKS
GDYLAVGDRGGRVVIFERKDGKATPDEHYSRSQLERLDFVSLDHPEYQYK
TEFQSHEPEFDYLKSLEIEEKINKVKWCTTPNGSLFILSTNDKTIKLWKV
KDRKVKKAKEVDPHQFVSSENSLLAERSFVSEQDIPSFTNGNNLEWKENV
ANNTFASQELHAKIGNNEDATYARCRRVYAHAHDFNINSISNNSDGETFI
SADDLRINLWNLEISNQSFNIIDMKPLNMEDLTEVITSAEFHPIHCNLLA
YGSSRGFIRLVDMRQSALCDYSARILQDAECQGSRSFFTEIVASISDIKF
SVDGRHILSRDYMDLKLWDINMDSSPVATFKIHEHLRPKLCDLYNNDSIF
DKFECCLSGDGLHFATGSYSNLLRIFSHGVGSEEGSTVEASKNPNRKPLQ
RARRSSLSNLTRGFHKQAGHENTSLGNEFSWSSSSKLQHVAWHPCANLIA
CASGNSLFFYYA*
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