Tc03v2_t000880.1

Overview
NameTc03v2_t000880.1
Unique NameTc03v2_t000880.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1596
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productperoxisomal membrane protein PEX14
NotePeroxisomal membrane protein PEX14
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603902
GenbankXM_007036151.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g000880Tc03v2_g000880Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p000880.1Tc03v2_p000880.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto142090auto142090Theobroma cacaoexon
exon-auto142091auto142091Theobroma cacaoexon
exon-auto142092auto142092Theobroma cacaoexon
exon-auto142093auto142093Theobroma cacaoexon
exon-auto142094auto142094Theobroma cacaoexon
exon-auto142095auto142095Theobroma cacaoexon
exon-auto142096auto142096Theobroma cacaoexon
exon-auto142097auto142097Theobroma cacaoexon
exon-auto142098auto142098Theobroma cacaoexon
exon-auto142099auto142099Theobroma cacaoexon
exon-auto142100auto142100Theobroma cacaoexon
exon-auto142101auto142101Theobroma cacaoexon
exon-auto142102auto142102Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto142103auto142103Theobroma cacaoCDS
CDS-auto142104auto142104Theobroma cacaoCDS
CDS-auto142105auto142105Theobroma cacaoCDS
CDS-auto142106auto142106Theobroma cacaoCDS
CDS-auto142107auto142107Theobroma cacaoCDS
CDS-auto142108auto142108Theobroma cacaoCDS
CDS-auto142109auto142109Theobroma cacaoCDS
CDS-auto142110auto142110Theobroma cacaoCDS
CDS-auto142111auto142111Theobroma cacaoCDS
CDS-auto142112auto142112Theobroma cacaoCDS
CDS-auto142113auto142113Theobroma cacaoCDS
CDS-auto142114auto142114Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t000880.1 ID=Tc03v2_t000880.1|Name=Tc03v2_t000880.1|organism=Theobroma cacao|type=mRNA|length=1596bp
ATGGCGACGACTCAGCCCCCTGCTCCTCCCAATTCCACCGAAGATAAACC
CCAAACTACTCCAGAGGTTGTACAACAAGCAAATGAGGTTCAACAAGATG
GTAGGCCAGAGGCTGCTAAACCGAATGTTCCAGCATCTGTGTTTGTGAAC
TCCGAACCGATAAGAGAGGACCAGGTTTCGAATGCTGTCAAATTTCTTTC
ACATCCCAAAGTTAGGGGTTCCCCTGTTATTTATAGACGATCATTTCTCG
AGAGGAAAGGCCTTACAAAGGAGGAAATAGATGAAGCTTTCCGGCGTGTG
CCTGACCCTCCTCCTAGTTCACGGCCAGCTAGTTTGAATCAAGATGGACA
AGTGAAGCCTTCATCTAGCGTTCAAACTCAAGCCACAATGCAAACTCCCC
CACCTGTAGCAGCTGCTCCTACTGGTATTGTGTCTGCCGGGACACTTGCA
CAGAGGCAGTTTCACTGGTATCATGCTGTTTTTGCTGTAGGGGTACTGGC
AGCTTCAGGAGCTGGCACAGCTGTATTAATCAAGAATGCTATTATCCCAA
GGTTGAAGTCTTGGATTCGTAAAGTTGTGTTGGAAGAAGAGAATGAAAAT
GCCAAGAAAAGTGATGCGAAACCAAGTTTGGCAGAAGAGGCAGCTGCTGC
AGCAAAAGCAGCTGCGGCTGCAGCCGCTGATGTTGCAAGAGCAAGCCAGG
AAATGTTGAGCTCCAAAAATGAAGAGAGAAGGCGCTTTGAGGAGTTTATG
AATCTGATAGATGTGCAAGTACAAGAAATGAAGTCAATGAGTAATGCCAT
AAGGAAATTGGAAGGACAAGCTGATAGCTCTGGCAGAACATTTGTTGATC
ATGAAGATCACAGAGTGTCGGCCTCAAGTACGAAGCAATCCTATGCGAAT
GGCAGGGTGGATGCTGATGTGCGCTCAGTGAGATCTGCCTCACCACCTGC
ATCTGCGGAACCACCTCACCCAAAGTCATATATGGAGATTATGGCAATGG
TCCAGAGAGGGGAGAAACCTTCAAATATCAGAGAAATCAATGATATGCCT
CCCAACCCTAACCAGCAACCATCAAATCCTCGCATAGCACCAAGAACTAA
GCCTTGGGAGGCGCAAAATGGCTCCAGCCAGGTACTCCAGTCTCAAGGAA
GTGGCGAAGGCTTGGTTCAAAAAGTTCAAGACAATGGGTTAAACTATTTG
GTTGATGATGAGAGCTCAACACCTTGGTGGCAACGGAAAAATGTCAGAAT
CACAGAGGTTGAAAATGAAGATGAACTTAAGGCTGGACCTTATGGGGTGA
AAACCAATGAACCACCAGTTCAGCGTACATGGGTTCCTCCCCAGCCGCCA
CCTGTGGCAATGCCAGAAGCAGCTGAAGCCATTCGACGGCCAAAATCATC
AGCTCTGAAAGAGGCTGCTAAACAAGAGGAATTGGCTGAGGATCAGTCAG
TGGCTTGCCCTTTAGAGGCAACTGATGAGTTAAATAGGATCACAAAAATA
TCTGAATCAGCAGGTGCAGTGGAGATAAATGGGGGTTTTTCAAGCATGAA
CTCAACTGAGATACAAGAACAAGAACAGAGCTACTCAGAGAACTAA
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protein sequence of Tc03v2_p000880.1

>Tc03v2_p000880.1 ID=Tc03v2_p000880.1|Name=Tc03v2_p000880.1|organism=Theobroma cacao|type=polypeptide|length=532bp
MATTQPPAPPNSTEDKPQTTPEVVQQANEVQQDGRPEAAKPNVPASVFVN
SEPIREDQVSNAVKFLSHPKVRGSPVIYRRSFLERKGLTKEEIDEAFRRV
PDPPPSSRPASLNQDGQVKPSSSVQTQATMQTPPPVAAAPTGIVSAGTLA
QRQFHWYHAVFAVGVLAASGAGTAVLIKNAIIPRLKSWIRKVVLEEENEN
AKKSDAKPSLAEEAAAAAKAAAAAAADVARASQEMLSSKNEERRRFEEFM
NLIDVQVQEMKSMSNAIRKLEGQADSSGRTFVDHEDHRVSASSTKQSYAN
GRVDADVRSVRSASPPASAEPPHPKSYMEIMAMVQRGEKPSNIREINDMP
PNPNQQPSNPRIAPRTKPWEAQNGSSQVLQSQGSGEGLVQKVQDNGLNYL
VDDESSTPWWQRKNVRITEVENEDELKAGPYGVKTNEPPVQRTWVPPQPP
PVAMPEAAEAIRRPKSSALKEAAKQEELAEDQSVACPLEATDELNRITKI
SESAGAVEINGGFSSMNSTEIQEQEQSYSEN*
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