Tc03v2_t000780.3

Overview
NameTc03v2_t000780.3
Unique NameTc03v2_t000780.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length636
Properties
Property NameValue
NotePNAS-3 related isoform 4
Model evidenceSupporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productputative exosome complex component rrp40, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603897
GenbankXM_007036144.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g000780Tc03v2_g000780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p000780.3Tc03v2_p000780.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto141741auto141741Theobroma cacaoexon
exon-auto141742auto141742Theobroma cacaoexon
exon-auto141743auto141743Theobroma cacaoexon
exon-auto141744auto141744Theobroma cacaoexon
exon-auto141745auto141745Theobroma cacaoexon
exon-auto141746auto141746Theobroma cacaoexon
exon-auto141747auto141747Theobroma cacaoexon
exon-auto141748auto141748Theobroma cacaoexon
exon-auto141749auto141749Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto141750auto141750Theobroma cacaoCDS
CDS-auto141751auto141751Theobroma cacaoCDS
CDS-auto141752auto141752Theobroma cacaoCDS
CDS-auto141753auto141753Theobroma cacaoCDS
CDS-auto141754auto141754Theobroma cacaoCDS
CDS-auto141755auto141755Theobroma cacaoCDS
CDS-auto141756auto141756Theobroma cacaoCDS
CDS-auto141757auto141757Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t000780.3 ID=Tc03v2_t000780.3|Name=Tc03v2_t000780.3|organism=Theobroma cacao|type=mRNA|length=636bp
ATGGAAAAGAAACAGTCAGGCTCGCCGCCTAGCCTCATTGATTCGACAGT
GGTTCCAGGGGATGTGGTGCTCGACCTCTCCTCCATGACCAACCAGACCA
TCATGCTAGGTGGTGGTCTCCGTCAGTATACTCCTTGCGTGGAAGATACT
GTTCTTGGTATTGTGGTGGACTCGAAAGCAGATAATTTTCTTATTGACAT
CAAAGGACCTGTGTTGGCCTTTTTGCCTGTTCTTGCATTTGAAGGGGGGA
CCAGGAGGAATATACCGAAGTTTGAGGTTGGTACTCTTCTTTATCTCCGA
GTTGTGAAGGCAAACTTTGGCATGAACCCTGAACTGTCCTGCACTGATGC
CAGTGGAAAAGCAGCTGAATTTGGCCCCCTCAAAGATGGATACATGTTTG
AAACTTCAACTGGTCTATCAAGAAAGCTGTTAAGTTCACCAACATGTCCA
GTTCTTGAGGCTCTTGGCAAGAAACTCTCCTTTGAAATAGCTGTTGGCTT
AAATGGCCGGGTTTGGGTGAATGCTGCCACTCCAGACACCATCGTCGTTG
TTGCTAACGCAATCATGAACTCAGAATCCCTAAGTGGAGCGCAGCAGATA
ATTATGGTGGAGCATTTGCTTAAGAACATCCAATGA
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protein sequence of Tc03v2_p000780.3

>Tc03v2_p000780.3 ID=Tc03v2_p000780.3|Name=Tc03v2_p000780.3|organism=Theobroma cacao|type=polypeptide|length=212bp
MEKKQSGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQYTPCVEDT
VLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTLLYLR
VVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCP
VLEALGKKLSFEIAVGLNGRVWVNAATPDTIVVVANAIMNSESLSGAQQI
IMVEHLLKNIQ*
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