Tc03v2_t000780.1

Overview
NameTc03v2_t000780.1
Unique NameTc03v2_t000780.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length723
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productputative exosome complex component rrp40, transcript variant X1
NotePNAS-3 related isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603897
GenbankXM_007036141.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g000780Tc03v2_g000780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p000780.1Tc03v2_p000780.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto141700auto141700Theobroma cacaoexon
exon-auto141701auto141701Theobroma cacaoexon
exon-auto141702auto141702Theobroma cacaoexon
exon-auto141703auto141703Theobroma cacaoexon
exon-auto141704auto141704Theobroma cacaoexon
exon-auto141705auto141705Theobroma cacaoexon
exon-auto141706auto141706Theobroma cacaoexon
exon-auto141707auto141707Theobroma cacaoexon
exon-auto141708auto141708Theobroma cacaoexon
exon-auto141709auto141709Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto141710auto141710Theobroma cacaoCDS
CDS-auto141711auto141711Theobroma cacaoCDS
CDS-auto141712auto141712Theobroma cacaoCDS
CDS-auto141713auto141713Theobroma cacaoCDS
CDS-auto141714auto141714Theobroma cacaoCDS
CDS-auto141715auto141715Theobroma cacaoCDS
CDS-auto141716auto141716Theobroma cacaoCDS
CDS-auto141717auto141717Theobroma cacaoCDS
CDS-auto141718auto141718Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t000780.1 ID=Tc03v2_t000780.1|Name=Tc03v2_t000780.1|organism=Theobroma cacao|type=mRNA|length=723bp
ATGGAAAAGAAACAGTCAGGCTCGCCGCCTAGCCTCATTGATTCGACAGT
GGTTCCAGGGGATGTGGTGCTCGACCTCTCCTCCATGACCAACCAGACCA
TCATGCTAGGTGGTGGTCTCCGTCAGGATTGTGATGCTATTTCTGTGATG
AAGGCTGGAACACTTAGGTTCTCAAAACCAAATAAGTACTGGGTTGAAAG
TTCTCAGAAAAGGTATACTCCTTGCGTGGAAGATACTGTTCTTGGTATTG
TGGTGGACTCGAAAGCAGATAATTTTCTTATTGACATCAAAGGACCTGTG
TTGGCCTTTTTGCCTGTTCTTGCATTTGAAGGGGGGACCAGGAGGAATAT
ACCGAAGTTTGAGGTTGGTACTCTTCTTTATCTCCGAGTTGTGAAGGCAA
ACTTTGGCATGAACCCTGAACTGTCCTGCACTGATGCCAGTGGAAAAGCA
GCTGAATTTGGCCCCCTCAAAGATGGATACATGTTTGAAACTTCAACTGG
TCTATCAAGAAAGCTGTTAAGTTCACCAACATGTCCAGTTCTTGAGGCTC
TTGGCAAGAAACTCTCCTTTGAAATAGCTGTTGGCTTAAATGGCCGGGTT
TGGGTGAATGCTGCCACTCCAGACACCATCGTCGTTGTTGCTAACGCAAT
CATGAACTCAGAATCCCTAAGTGGAGCGCAGCAGATAATTATGGTGGAGC
ATTTGCTTAAGAACATCCAATGA
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protein sequence of Tc03v2_p000780.1

>Tc03v2_p000780.1 ID=Tc03v2_p000780.1|Name=Tc03v2_p000780.1|organism=Theobroma cacao|type=polypeptide|length=241bp
MEKKQSGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQDCDAISVM
KAGTLRFSKPNKYWVESSQKRYTPCVEDTVLGIVVDSKADNFLIDIKGPV
LAFLPVLAFEGGTRRNIPKFEVGTLLYLRVVKANFGMNPELSCTDASGKA
AEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALGKKLSFEIAVGLNGRV
WVNAATPDTIVVVANAIMNSESLSGAQQIIMVEHLLKNIQ*
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