Tc03v2_t000570.1

Overview
NameTc03v2_t000570.1
Unique NameTc03v2_t000570.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1059
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productspermidine synthase 1
NoteSpermidine synthase 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603873
GenbankXM_018118367.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g000570Tc03v2_g000570Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p000570.1Tc03v2_p000570.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto141328auto141328Theobroma cacaoexon
exon-auto141329auto141329Theobroma cacaoexon
exon-auto141330auto141330Theobroma cacaoexon
exon-auto141331auto141331Theobroma cacaoexon
exon-auto141332auto141332Theobroma cacaoexon
exon-auto141333auto141333Theobroma cacaoexon
exon-auto141334auto141334Theobroma cacaoexon
exon-auto141335auto141335Theobroma cacaoexon
exon-auto141336auto141336Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto141337auto141337Theobroma cacaoCDS
CDS-auto141338auto141338Theobroma cacaoCDS
CDS-auto141339auto141339Theobroma cacaoCDS
CDS-auto141340auto141340Theobroma cacaoCDS
CDS-auto141341auto141341Theobroma cacaoCDS
CDS-auto141342auto141342Theobroma cacaoCDS
CDS-auto141343auto141343Theobroma cacaoCDS
CDS-auto141344auto141344Theobroma cacaoCDS
CDS-auto141345auto141345Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t000570.1 ID=Tc03v2_t000570.1|Name=Tc03v2_t000570.1|organism=Theobroma cacao|type=mRNA|length=1059bp
ATGGAAGGATTGAATGTTGGAACAGATAATGGCTTCGGGTTGGCTGAGGA
ATCCACCAATTCACACGAGAAGGAACTGGCAGCAGATGGCTTTGCGAGTG
AACATGAGACTATCCAGTCCTCAGCAGCCGCTGATGATCTCGAGATGCAC
TATGAAATAATCCCTGGTGCATCTGGTCAACTACCTGGATGGTATGCTAA
TGTTCTCCGAGAATGGCCAGGGGAGGCAAAACTCTACAAAATAGAAAAGA
CCTTGTTTCATGGAAAGTCAGAATACCAGGAACTTTTTGTATTTCAGTCG
TCAAACCATGGCAAGATTGCCATCCTCGATGGATCTCTTCAGCTCACCGA
GCGGGATGAATTTGCTTACCAGGAAATGCTAACTCACCTTCCTCTTTGCT
CGATTCCGAATCCCAACAAGGTTCTGGTAATCGGAGGAGGAGACGGTGGT
ATTCTACGAGAACTATCCCGTCATCCTACTGTGGAGCAGATTGATATTTG
CGAACTTGACGCAATGGTTATTGAGGTTTACAAGAAATTCTTTCCCGGTG
TAGCAGTTGGATACGAGGATCCCAGGGTGAATGTGCATATAGGCAATGGT
GTTGAATTCATCAAGTCTATTCCTCCAGGCACATATGATGCCATTATTTT
GGATGCATTCCAGGAGATGGGGCCTATTGCAGTTGAACTTGGGGATAAAC
GCTTCCTGGGATCAGTGGCAACGGCTCTTCGCCCTGGCGGAGTCATGTCA
TGCCCAGCAGAAGGTCCATGGCAGAAAGATTTCAACCTTGCACATACAGT
GGCAAATTGTCGCAAAGTTTTCAAAGGATCTGTTAATTATGCTTGGACAG
CAATTCCCGCATATCCCAGTGGGGCAATCGGATTCATGCTTTGCTCCACT
GAGGGGCCAGCAGTAGACTTCAAACACCCAATCAATCCTTTAAATCCAGA
ATATCTTGGTGTAGCAGAAGGACCACCAAAGTTTTACAACTCTGAGATTC
ATGCTGCAGCATTCTGTCTCCCATCTTTCACCATTAAGATGATTGGTTCA
AAAATCTGA
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protein sequence of Tc03v2_p000570.1

>Tc03v2_p000570.1 ID=Tc03v2_p000570.1|Name=Tc03v2_p000570.1|organism=Theobroma cacao|type=polypeptide|length=353bp
MEGLNVGTDNGFGLAEESTNSHEKELAADGFASEHETIQSSAAADDLEMH
YEIIPGASGQLPGWYANVLREWPGEAKLYKIEKTLFHGKSEYQELFVFQS
SNHGKIAILDGSLQLTERDEFAYQEMLTHLPLCSIPNPNKVLVIGGGDGG
ILRELSRHPTVEQIDICELDAMVIEVYKKFFPGVAVGYEDPRVNVHIGNG
VEFIKSIPPGTYDAIILDAFQEMGPIAVELGDKRFLGSVATALRPGGVMS
CPAEGPWQKDFNLAHTVANCRKVFKGSVNYAWTAIPAYPSGAIGFMLCST
EGPAVDFKHPINPLNPEYLGVAEGPPKFYNSEIHAAAFCLPSFTIKMIGS
KI*
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