Tc03v2_t000290.1

Overview
NameTc03v2_t000290.1
Unique NameTc03v2_t000290.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length879
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Productputative DNA glycosylase At3g47830, transcript variant X2
NotePutative DNA glycosylase At3g47830
Cross References
External references for this mRNA
DatabaseAccession
GeneID18603837
GenbankXM_018117861.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g000290Tc03v2_g000290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p000290.1Tc03v2_p000290.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto140812auto140812Theobroma cacaoexon
exon-auto140813auto140813Theobroma cacaoexon
exon-auto140814auto140814Theobroma cacaoexon
exon-auto140815auto140815Theobroma cacaoexon
exon-auto140816auto140816Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto140817auto140817Theobroma cacaoCDS
CDS-auto140818auto140818Theobroma cacaoCDS
CDS-auto140819auto140819Theobroma cacaoCDS
CDS-auto140820auto140820Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t000290.1 ID=Tc03v2_t000290.1|Name=Tc03v2_t000290.1|organism=Theobroma cacao|type=mRNA|length=879bp
ATGAAAATGCAGAAAAGCCGCAAAAGGAAGCAGCTTGGGATCGATGGCCA
CTCCAAAACACCCAAAATAACGACCGAGGAGCCATACCCATCTCACCATA
GACCCACCCCTGACGAATGCAGATCCGTAAGAGACGAGCTCTTGGCTCTC
CATGGTTTCCCTGCAGAGTTCCTCAAGTACCGCCATCAGAGGCTCATCAA
AACCGAGCCCACCATCGACGCCAAATCAGAGCCTTTGGATAACAATTATG
ATGATGGGGAAGAGAGTGTGTTGGATGGTCTGGTGAAAACTGTGCTCTCT
CAGAATACTACTGAGCTCAATTCCCAAAAGGCTTTTGCTTCTCTAAAGTC
TGCTTTTCCCACCTGGGAAGATGTACTTGCTGCTGAGTCAAAAAATCTAG
AAAATGCAATAAGATGCGGAGGTCTAGCACCAAGGAAGGCCTCTTGTATT
AAGAATGTGTTGAGGTGTCTGCATGAAAGAAAGGGCAAACTATGCTTTGA
GTATTTACGAGATTTGTCAATTGATGAAATCAAGGCTGAGCTCTCCAATT
TTAAAGGGGTTGGCCCTAAGACGGTGGCTTGTGTTTTGATGTTCAATCTT
CAGCAAGATGATTTCCCAGTGGACACACATGTGTTTGAGATTGCAAGGGC
CATTGGTTGGGTCCCAGCTACAGCGGACAGGAATAAGACATACCTTCATC
TGAACCGAAGGATCCCAAATAAACTTAAGTTTGATCTGAACTGCCTTCTG
TATACGCATGGTAAGCTTTGCCGCAAATGCACAATGAAAGGTAGTAGCCA
GCAAAAATCGGCACGCAATGATGATTCATGTCCACTATGTACTTACTGCA
AGAACTCTAGCGTGAACAAAATCCAGTAA
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protein sequence of Tc03v2_p000290.1

>Tc03v2_p000290.1 ID=Tc03v2_p000290.1|Name=Tc03v2_p000290.1|organism=Theobroma cacao|type=polypeptide|length=293bp
MKMQKSRKRKQLGIDGHSKTPKITTEEPYPSHHRPTPDECRSVRDELLAL
HGFPAEFLKYRHQRLIKTEPTIDAKSEPLDNNYDDGEESVLDGLVKTVLS
QNTTELNSQKAFASLKSAFPTWEDVLAAESKNLENAIRCGGLAPRKASCI
KNVLRCLHERKGKLCFEYLRDLSIDEIKAELSNFKGVGPKTVACVLMFNL
QQDDFPVDTHVFEIARAIGWVPATADRNKTYLHLNRRIPNKLKFDLNCLL
YTHGKLCRKCTMKGSSQQKSARNDDSCPLCTYCKNSSVNKIQ*
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