Tc02v2_t029540.2

Overview
NameTc02v2_t029540.2
Unique NameTc02v2_t029540.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length606
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productphotosynthetic NDH subunit of lumenal location 2, chloroplastic, transcript variant X1
NotePhotosynthetic NDH subunit of lumenal location 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610371
GenbankXM_007045979.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g029540Tc02v2_g029540Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p029540.2Tc02v2_p029540.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto136077auto136077Theobroma cacaoexon
exon-auto136078auto136078Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto136079auto136079Theobroma cacaoCDS
CDS-auto136080auto136080Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t029540.2 ID=Tc02v2_t029540.2|Name=Tc02v2_t029540.2|organism=Theobroma cacao|type=mRNA|length=606bp
ATGAGCACCTTCACTAATTCTACAGCTCTCATCCATGTCAGCCAGAGCTT
CACAGCCCCCCAAACTCACCTTTGCAACAAACCCTCCATCCCCATAATCC
GAGCATCGTTTCCATCCCAGCAAAATGATGATGTGATGACCACCAGTACC
AACCGGAGAAAACTTGTCACAACAATTCTGGCTACTCCACTAGCAGCACT
GGGGCTGCATGGCACCTCGGTGGCAGTAGCAGAGAATTGGGGCACGCGTT
CGTTTCTCAGGGAACGGTTTTTCGAGCCCGGGCTGTCGCCGGAAGATGCT
GCCGCTAGGATTAAGCAAACTGCTGAGGGGTTGCATAGCATGAGAGAGAT
GTTGGACAACATGTCATGGAGGTATGTCATGTTTTACATTCGACTAAAGC
AGGCTTATCTTTCTCAGGATTTGAAGAATGCTATGAGCACATTGCCCCAA
GCTCGAAAGGAAGAATATGTGAAAACAGCGAATGAATTGGTAGATAACAT
GGCTGAGTTTGATTATTACGTTCGCACACCAAAAGTATACGAATCATACT
TGTACTACGAGAAGACATTGAAATCCATAGATGATTTAGTGGCATTATTG
GGGTAG
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protein sequence of Tc02v2_p029540.2

>Tc02v2_p029540.2 ID=Tc02v2_p029540.2|Name=Tc02v2_p029540.2|organism=Theobroma cacao|type=polypeptide|length=202bp
MSTFTNSTALIHVSQSFTAPQTHLCNKPSIPIIRASFPSQQNDDVMTTST
NRRKLVTTILATPLAALGLHGTSVAVAENWGTRSFLRERFFEPGLSPEDA
AARIKQTAEGLHSMREMLDNMSWRYVMFYIRLKQAYLSQDLKNAMSTLPQ
ARKEEYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLVALL
G*
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