Tc02v2_t028460.1

Overview
NameTc02v2_t028460.1
Unique NameTc02v2_t028460.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1191
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Productglycerophosphodiester phosphodiesterase GDPD6, transcript variant X2
NoteGlycerophosphodiester phosphodiesterase GDPD5
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610246
GenbankXM_007045789.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g028460Tc02v2_g028460Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p028460.1Tc02v2_p028460.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto134039auto134039Theobroma cacaoexon
exon-auto134040auto134040Theobroma cacaoexon
exon-auto134041auto134041Theobroma cacaoexon
exon-auto134042auto134042Theobroma cacaoexon
exon-auto134043auto134043Theobroma cacaoexon
exon-auto134044auto134044Theobroma cacaoexon
exon-auto134045auto134045Theobroma cacaoexon
exon-auto134046auto134046Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto134047auto134047Theobroma cacaoCDS
CDS-auto134048auto134048Theobroma cacaoCDS
CDS-auto134049auto134049Theobroma cacaoCDS
CDS-auto134050auto134050Theobroma cacaoCDS
CDS-auto134051auto134051Theobroma cacaoCDS
CDS-auto134052auto134052Theobroma cacaoCDS
CDS-auto134053auto134053Theobroma cacaoCDS
CDS-auto134054auto134054Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t028460.1 ID=Tc02v2_t028460.1|Name=Tc02v2_t028460.1|organism=Theobroma cacao|type=mRNA|length=1191bp
ATGACTTGGTTTGGCTTTGTCCCTTTGATAGTTCTTATAGTGATTGGGGA
GTGTGCTGGAAGACAACTACATCCACTTCCAAGTAAAGTAGCTGGGAGAC
ATGTAAAGCCCCTACAATCAATTTGCCTGTATAATATTGCTCATCGAGGC
TCAAATGGGGAGTTTCCTGAAGAAACTGTTGCAGCATACAAGAGAGCTAT
TGAAGAGGGTGCAGATTTCATTGAAACAGATATCCTTGCCTCCAAAGATG
GCATCCTAATATGCTTTCATGATGTAACACTTGATAATACTACTGATGTT
GCAAATCATAAGCAATTTGCTAATCGAAAAAGATCATATGAGGTCCAAGG
AATAAACATCACTGGATGGTTTGTTGTTGATTTCACACTAGAAGAACTGA
AGCTATTACGTGTGAAGCAACGCTATGGTTTCCGGGATCAACAATATAAT
GGGAAATTCCCATTGATTACGTTTGAAGAGTTCATCTCACTTGCATTGGA
TGCAAAAAGAATTGTTGGAATCTATCCAGAGATAAAGAATCCGGTTTTCA
TCAATCAGCATGTGAAATGGTCAGAGGGAAAAAAGTTTGAGGACAAATTT
GTGCAGACACTGAAGAAATATGGATATAAAGGGTCTTATATGTCAAAAGA
ATGGCTGAGGCAACCGGTGTTTATCCAGTCATTTGCTCCTACTTCTCTCA
CATATATTTCTAACCTCACAGACTTGCCAAAAGTTTTGTTGATAGGTGAT
CTAACAACAAGAACTGAGGACACTAACCAGTCATTCTTGGAGATTACTTC
AGATAGTTATTTCAATTTCATCAAGAACTATGTGGTTGGAATTGGACCTT
GGAAGGAGACAATTGTACCCTCAATCAATAATTACTTAAGTGAAGCTACT
GATCTTGTTGCCAGAGCTCATGCTCATGGCCTCCAGGTCCATCCATATAC
CTTCCGAAATGAAAACTCGTTCTTGCACTTCAACTTTAGCCAAGATCCAT
ATGAGGAGTACCATTACTGGATAAACAAAATAAAAGTAGATGGACTCTTC
ACAGACTTTGCAGGTAGCCTCCATAATTTCCAAGAATGGACCTCTCACCA
AAGAGAAGGTAGAGAAGGTGGCGCATCGAAGCTACTTCATAAGATTGCAA
AAATGATTTCCTCATACAAAGCCAATGAAAAACTTCATTGA
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protein sequence of Tc02v2_p028460.1

>Tc02v2_p028460.1 ID=Tc02v2_p028460.1|Name=Tc02v2_p028460.1|organism=Theobroma cacao|type=polypeptide|length=397bp
MTWFGFVPLIVLIVIGECAGRQLHPLPSKVAGRHVKPLQSICLYNIAHRG
SNGEFPEETVAAYKRAIEEGADFIETDILASKDGILICFHDVTLDNTTDV
ANHKQFANRKRSYEVQGINITGWFVVDFTLEELKLLRVKQRYGFRDQQYN
GKFPLITFEEFISLALDAKRIVGIYPEIKNPVFINQHVKWSEGKKFEDKF
VQTLKKYGYKGSYMSKEWLRQPVFIQSFAPTSLTYISNLTDLPKVLLIGD
LTTRTEDTNQSFLEITSDSYFNFIKNYVVGIGPWKETIVPSINNYLSEAT
DLVARAHAHGLQVHPYTFRNENSFLHFNFSQDPYEEYHYWINKIKVDGLF
TDFAGSLHNFQEWTSHQREGREGGASKLLHKIAKMISSYKANEKLH*
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