Tc02v2_t027780.1

Overview
NameTc02v2_t027780.1
Unique NameTc02v2_t027780.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length972
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ProductDNA-3-methyladenine glycosylase
NoteDNA glycosylase superfamily protein isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610162
GenbankXM_007045672.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g027780Tc02v2_g027780Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p027780.1Tc02v2_p027780.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto132638auto132638Theobroma cacaoexon
exon-auto132639auto132639Theobroma cacaoexon
exon-auto132640auto132640Theobroma cacaoexon
exon-auto132641auto132641Theobroma cacaoexon
exon-auto132642auto132642Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto132643auto132643Theobroma cacaoCDS
CDS-auto132644auto132644Theobroma cacaoCDS
CDS-auto132645auto132645Theobroma cacaoCDS
CDS-auto132646auto132646Theobroma cacaoCDS
CDS-auto132647auto132647Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t027780.1 ID=Tc02v2_t027780.1|Name=Tc02v2_t027780.1|organism=Theobroma cacao|type=mRNA|length=972bp
ATGATTTTCTCAAGCATGTCTAAAGCTAATGTCAGGAGACATATTCTGGA
GAAGAACAGAAGTCCTAAAGAAAAAGAGAAGCCAGCACAAAGTGTGCTGT
CCAAACACTTGAAGAAAATCTACCCAATTGGACTTCAAAGGAGCACTTCA
TCATTATCACTATCATCCTTATCATTGTCTTTGTCACAGAACTCGAATGA
CTCCTCTCTTACAGATCATTCTAGCACCCCTCTGGAGCAGAAGATTTCAT
TAGCACTCAGCTTGATTGCTCCCCATCATGAAAGAAGAGAATTCGTCGTC
CCGGTTGTTAAAAGTGTCCAGCATCATCATCATCAGCAGCAGCAACAACC
AAGTCAGGATCCTGGTAGTGGAGAACTCAGGAGGTGCAACTGGGTTACAA
AGAATAGTGATAAAGTATACGTATCATTTCATGACGAGCAGTGGGGGGTT
CCTGTTTATGATGACAACCAATTGTTCGAGCTGCTTGCATTGTCTGGTAT
GCTGATGGACTACAATTGGACAGAGATTTTGAAAAGAAAGGAACTATACA
GAGAAGCCTTCTCTGGCTTTGATCCTGAGATTGTTGCTAAAATGGGGGAC
AAAGAAATCAATGAGATATCATCAGACAAAGCCATCATGTTGGCAGAGAG
CAGAGTGAGGTGCATAGTAGACAATGCTAAATGCATACTGAAGATTGTGA
GGGAATATGGATCATTCAGCAGCTTCATGTGGGGTTACGTGAATTACAAA
CCAACCATCAACAGATACAAATACCCTAGAAATGTTCCCCTCAGAACTCC
AAAAGCAGAAGCCATTAGCAGGGATTTACTGAAGCGTGGATTTCGGTTTG
TTGGCCCTGTGATTGTGTGCTCATTCATGCAAGCAGCAGGATTGACAATT
GATCATCTGGTTGATTGTTTCAGATACAGTGAATGTGTAGGCCTTGCTGA
AAGACCTTGGAGGCACATTTAA
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protein sequence of Tc02v2_p027780.1

>Tc02v2_p027780.1 ID=Tc02v2_p027780.1|Name=Tc02v2_p027780.1|organism=Theobroma cacao|type=polypeptide|length=324bp
MIFSSMSKANVRRHILEKNRSPKEKEKPAQSVLSKHLKKIYPIGLQRSTS
SLSLSSLSLSLSQNSNDSSLTDHSSTPLEQKISLALSLIAPHHERREFVV
PVVKSVQHHHHQQQQQPSQDPGSGELRRCNWVTKNSDKVYVSFHDEQWGV
PVYDDNQLFELLALSGMLMDYNWTEILKRKELYREAFSGFDPEIVAKMGD
KEINEISSDKAIMLAESRVRCIVDNAKCILKIVREYGSFSSFMWGYVNYK
PTINRYKYPRNVPLRTPKAEAISRDLLKRGFRFVGPVIVCSFMQAAGLTI
DHLVDCFRYSECVGLAERPWRHI*
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