Tc02v2_t027120.1

Overview
NameTc02v2_t027120.1
Unique NameTc02v2_t027120.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2988
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 24 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productaconitate hydratase, cytoplasmic
NoteAconitate hydratase 2, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18610098
GenbankXM_007045580.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g027120Tc02v2_g027120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p027120.1Tc02v2_p027120.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto131298auto131298Theobroma cacaoexon
exon-auto131299auto131299Theobroma cacaoexon
exon-auto131300auto131300Theobroma cacaoexon
exon-auto131301auto131301Theobroma cacaoexon
exon-auto131302auto131302Theobroma cacaoexon
exon-auto131303auto131303Theobroma cacaoexon
exon-auto131304auto131304Theobroma cacaoexon
exon-auto131305auto131305Theobroma cacaoexon
exon-auto131306auto131306Theobroma cacaoexon
exon-auto131307auto131307Theobroma cacaoexon
exon-auto131308auto131308Theobroma cacaoexon
exon-auto131309auto131309Theobroma cacaoexon
exon-auto131310auto131310Theobroma cacaoexon
exon-auto131311auto131311Theobroma cacaoexon
exon-auto131312auto131312Theobroma cacaoexon
exon-auto131313auto131313Theobroma cacaoexon
exon-auto131314auto131314Theobroma cacaoexon
exon-auto131315auto131315Theobroma cacaoexon
exon-auto131316auto131316Theobroma cacaoexon
exon-auto131317auto131317Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto131318auto131318Theobroma cacaoCDS
CDS-auto131319auto131319Theobroma cacaoCDS
CDS-auto131320auto131320Theobroma cacaoCDS
CDS-auto131321auto131321Theobroma cacaoCDS
CDS-auto131322auto131322Theobroma cacaoCDS
CDS-auto131323auto131323Theobroma cacaoCDS
CDS-auto131324auto131324Theobroma cacaoCDS
CDS-auto131325auto131325Theobroma cacaoCDS
CDS-auto131326auto131326Theobroma cacaoCDS
CDS-auto131327auto131327Theobroma cacaoCDS
CDS-auto131328auto131328Theobroma cacaoCDS
CDS-auto131329auto131329Theobroma cacaoCDS
CDS-auto131330auto131330Theobroma cacaoCDS
CDS-auto131331auto131331Theobroma cacaoCDS
CDS-auto131332auto131332Theobroma cacaoCDS
CDS-auto131333auto131333Theobroma cacaoCDS
CDS-auto131334auto131334Theobroma cacaoCDS
CDS-auto131335auto131335Theobroma cacaoCDS
CDS-auto131336auto131336Theobroma cacaoCDS
CDS-auto131337auto131337Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t027120.1 ID=Tc02v2_t027120.1|Name=Tc02v2_t027120.1|organism=Theobroma cacao|type=mRNA|length=2988bp
ATGTATATAACGACCTCATCCTCAGCTTCTTCCTCTCTCTTAAGAGCAGC
TTCCTCTTATTCCCGGACTCGCCTTTTCCCTTCTTCATTTCGGAATCTCA
CTTCGACTAATCCCGCCTCTCCTTCTCTCGTCAGCCACCACCGATCTCTC
ACCTCCGCCGCCGTTCGTTCGTTCCACGGCTCCGTTCCGCGGTGGAGCCA
CCGTCTCGATTGGAGATCTCCTCTTAGCCTCCGTGCTCAGATCAGAGCTG
TTACTCCAGTCATCGAACGGTTGGAGAGGAAGTTTGCTACTATGGCTTCT
GAACATCCTTTCAAGGCAGTGTTGACAAGTCTTCCCAAGCCAGGTGGTGG
CGAGTTTGGAAAGTTCTATAGCTTGCCTGCCCTGAATGATCCAAGGATTG
ATAAACTGCCATACTCTATCAGAATCCTGCTCGAATCTGCCGTTCGTAAT
TGTGACAACTTCCAAGTGAAGAAGGAAGATGTTGAGAAAATTATTGATTG
GGAAAATACATCACCAAAGCAAGTTGAAATCCCCTTCAAGCCTGCTCGTG
TTCTTTTGCAGGATTTTACGGGAGTGCCAGCTGTAGTCGACCTTGCTTGT
ATGCGTGATGCTATGAACAAGCTTGGCAGTGATACAAGCAAGATTAATCC
TTTGGTTCCAGTAGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTAA
CAAGATCAGAAAATGCAGTGCAAGCAAACATGGAGCTTGAGTTTCAGAGG
AACAAGGAAAGGTTTTCTTTCCTTAAATGGGGGTCTACAGCTTTCCGTAA
TATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTGCATCAGGTTAACCTTG
AATATCTTGGACGGGTTGTGTTCAACACTGATGGCCTGCTCTACCCTGAT
AGTGTGGTTGGAACTGATTCCCATACAACTATGATAGATGGGCTAGGAGT
TGCTGGATGGGGAGTTGGAGGTATTGAAGCTGAGGCAGCCATGCTTGGTC
AGCCCATGAGCATGGTGTTGCCCGGTGTTGTTGGATTCAAGTTATCTGGA
AAATTAAGAAACGGTGTGACAGCTACAGACTTGGTTCTAACCGTGACACA
GATGCTGAGGAAGCATGGTGTTGTTGGCAAATTTGTTGAGTTTTACGGGG
ATGGTATGGGTGAACTATCATTGGCTGACAGGGCTACCATTGCTAATATG
TCTCCTGAGTATGGTGCAACCATGGGATTCTTCCCTGTTGATCATGTTAC
TTTGCAGTATCTCAAATTGACTGGCAGAAGTGATGAAACTGTGGCAATGA
TAGAATCATATCTCCGTGCAAATAAAATGTTTGTTGACTACAATGAGCCC
CAACAAGAAAGAGTGTACTCATCATATCTCGAATTAAACCTTGCAGAAGT
TGAACCCTGTATTTCAGGACCAAAGAGACCTCATGATCGGGTTCCTTTGA
AAGAAATGAAGGCTGATTGGAATTCTTGTCTTAATAATAAAGTTGGTTTC
AAGGGTTTTGCTGTACCAAAAGAGGCACAGGACAAAGTGGCAAAATTTTC
ATTCCATGGGAAGCCAGCAGAGCTTAAGCATGGCAGTGTTGTGATTGCTG
CAATTACGAGCTGCACCAATACATCAAACCCAAGTGTGATGCTTGGAGCA
GGTCTTGTTGCAAAAAAGGCTTGTGAGCTTGGTTTACAGGTCAAGCCTTG
GATAAAGACAAGTCTTGCACCAGGTTCAGGAGTTGTTACAAAATATTTAT
TGCAGAGTGGGCTGCAAGAATACTTGAATAAGCAGGGCTTCAATATTGTT
GGATATGGCTGCACAACATGTATTGGAAATTCAGGGGAATTGGATGAATC
AGTTGCCTCTGCTATTTCAGAAAATGACGTTATAGCTGCTGCTGTGCTTT
CTGGGAACCGGAATTTTGAGGGTCGTGTTCATGCCTTAACAAGAGCCAAC
TACCTTGCTTCACCACCTTTAGTTGTTGCCTATGCCCTAGCTGGCACGGT
TGACATTGACTTTGACAAGGAGCCAATTGGAACTGGGAAGGATGGTAAGA
GTGTCTATTTTAAGGATATCTGGCCATCTACTGAGGAAATTGCACAGGCT
GTTCAATCCAGTGTCTTGCCAGAGATGTTCAAAAGTACTTACCAGGCTAT
TACAAAGGGTAATCCCATGTGGAATCAGCTATCAGTGCCATCTTCCACCA
TGTACTCATGGGACTCCAACTCAACCTACATTCATGAGCCTCCATACTTC
AAGAGTATGACCATGGAGCCTCCTGGGGCCCATGGGGTAAAGGATGCCTA
CTGTTTACTGAACTTTGGTGACAGTATCACAACAGATCACATTTCTCCAG
CAGGGAGCATCCATAAGGACAGTCCTGCTGCAAAATACCTACTTGAACGT
GGGGTGGAACACAAGGACTTCAATTCTTATGGAAGTCGTCGTGGTAACGA
TGAAGTGATGGCTAGGGGAACTTTTGCTAACATTCGCCTTGTGAACAAAC
TGTTGAATGGGGAAGTTGGCCCAAAGACCGTACATGTCCCTACAGGAGAA
AAACTCTATGTATTTGAAGCAGCAATGAGGTACAAGGCTGCAGGACATGA
CACCATTGTTTTGGCTGGAGCTGAGTATGGAAGTGGTAGCTCCCGAGATT
GGGCTGCAAAAGGTCCAATGCTATTGGGAGTAAAAGCAGTGATTGCCAAA
AGTTTTGAGAGAATCCATCGTAGTAATTTGGTAGGAATGGGCATCATTCC
ACTTTGTTTCAAGTCTGGTGAGGATGCTGACACACTAGGTTTGACTGGTC
ACGAGCGTTATACCATAGATCTCCCAAGCAATATAACTCATATAAGGCCT
GGCCAAGATGTGTCTGTCACAACCAACAACGGGAAGTCTTTCACCTGCAC
TGTCCGCTTCGACACTGAGGTTGAATTGGCCTACTTCAACAATGGTGGTA
TACTTCCATATGTTATTAGAAACTTAATTAAGCAGTAA
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protein sequence of Tc02v2_p027120.1

>Tc02v2_p027120.1 ID=Tc02v2_p027120.1|Name=Tc02v2_p027120.1|organism=Theobroma cacao|type=polypeptide|length=996bp
MYITTSSSASSSLLRAASSYSRTRLFPSSFRNLTSTNPASPSLVSHHRSL
TSAAVRSFHGSVPRWSHRLDWRSPLSLRAQIRAVTPVIERLERKFATMAS
EHPFKAVLTSLPKPGGGEFGKFYSLPALNDPRIDKLPYSIRILLESAVRN
CDNFQVKKEDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLAC
MRDAMNKLGSDTSKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQR
NKERFSFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNTDGLLYPD
SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSG
KLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGELSLADRATIANM
SPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANKMFVDYNEP
QQERVYSSYLELNLAEVEPCISGPKRPHDRVPLKEMKADWNSCLNNKVGF
KGFAVPKEAQDKVAKFSFHGKPAELKHGSVVIAAITSCTNTSNPSVMLGA
GLVAKKACELGLQVKPWIKTSLAPGSGVVTKYLLQSGLQEYLNKQGFNIV
GYGCTTCIGNSGELDESVASAISENDVIAAAVLSGNRNFEGRVHALTRAN
YLASPPLVVAYALAGTVDIDFDKEPIGTGKDGKSVYFKDIWPSTEEIAQA
VQSSVLPEMFKSTYQAITKGNPMWNQLSVPSSTMYSWDSNSTYIHEPPYF
KSMTMEPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLER
GVEHKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE
KLYVFEAAMRYKAAGHDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAK
SFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNITHIRP
GQDVSVTTNNGKSFTCTVRFDTEVELAYFNNGGILPYVIRNLIKQ*
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