Tc02v2_t025960.1

Overview
NameTc02v2_t025960.1
Unique NameTc02v2_t025960.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1497
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
Productglutamate decarboxylase 4
NoteGlutamate decarboxylase 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609957
GenbankXM_007045335.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g025960Tc02v2_g025960Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p025960.1Tc02v2_p025960.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto128753auto128753Theobroma cacaoexon
exon-auto128754auto128754Theobroma cacaoexon
exon-auto128755auto128755Theobroma cacaoexon
exon-auto128756auto128756Theobroma cacaoexon
exon-auto128757auto128757Theobroma cacaoexon
exon-auto128758auto128758Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto128759auto128759Theobroma cacaoCDS
CDS-auto128760auto128760Theobroma cacaoCDS
CDS-auto128761auto128761Theobroma cacaoCDS
CDS-auto128762auto128762Theobroma cacaoCDS
CDS-auto128763auto128763Theobroma cacaoCDS
CDS-auto128764auto128764Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t025960.1 ID=Tc02v2_t025960.1|Name=Tc02v2_t025960.1|organism=Theobroma cacao|type=mRNA|length=1497bp
ATGGTGCTATCTAAGACGGCTTCTGAGTCTGATGTTTCAATTCACTCGAC
GTTCGCCTCTCGCTATGTCCGAGCCTCACTTCCCAGGTTCAAGATGCCAG
AGAACTCGGTACCAAAAGAAGCTGCATATCAGATCATTAACGATGAGCTG
ATGCTTGATGGGAACCCAAGGTTGAACCTTGCCTCTTTTGTTACTACCTG
GATGGAGCCTGAATGTGATAAGCTTATCATGGATGCCATTAACAAGAACT
ATGTTGACATGGATGAGTACCCTGTCACTACCGAGCTTCAGAACCGTTGT
GTGAACATGATAGCACATCTGTTCAATGCACCGCTTCAAGACTCCGAGGC
TGCAGTTGGAGTGGGAACAGTTGGGTCATCTGAGGCAATCATGTTGGCTG
GCCTTGCCTTCAAGAGAAAGTGGCAGAACAAGCGTAAGGCTGAAGGCAAA
CCTTATGACAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTG
GGAGAAATTTGCGAGGTACTTTGAGGTGGAGTTGAAGGAAGTGAAGCTGA
GGGAAGGCTACTATGTGATGGACCCCGCCAAAGCTGTGGAAATGGTAGAT
GAAAACACCATCTGCGTTGCTGCTATCTTGGGTTCCACCCTCAATGGAGA
ATTTGAAGATGTCAAGCTTCTAAATGATCTCTTGATAGAAAAGAACAAGG
AAACTGGATGGGATACACCAATTCATGTTGATGCAGCTAGTGGTGGATTT
ATTGCGCCATTTTTGTACCCAGAGCTTGAATGGGACTTCAGGCTTCCCCT
TGTGAAGAGCATTAATGTTAGTGGCCACAAATATGGTCTTGTCTATGCTG
GAATTGGATGGGTTATCTGGAGGAGCAGGGAAGACTTGCCTGAAGAACTT
ATTTTCCACATTAACTACCTTGGAGCAGATCAACCCACTTTCACTCTCAA
TTTTTCCAAAGGTTCTAGCCAAGTCATTGCCCAGTATTACCAACTTATCC
GTTTGGGTTATGAGGGATACAGAAATGTGATGGAAAACTGTCATGAAAAC
GCAATGGTCCTGAAAGAAGGATTGGAGAAAACAGGGCGGTTTAACATTGT
GTCAAAGGACCATGGGGTTCCCCTGGTGGCCTTTTCTCTCAAGGACAACA
AGCGCCACGATGAATTCGAGATATCTGACATGTTGCGCCGGTTTGGTTGG
ATCGTGCCTGCCTACACCATGCCAGCAGATGCTCAGCACATCACTGTGCT
CCGTGTTGTCATCAGGGAAGACTTCTCCCGCACCTTAGCCGAGCGTCTCG
TGCTTGACATCAAAAAGGTGCTCCATGAGCTGGATACCCTCCCTGCAAAG
GTCAATGCCAAACTGGCTATGGCTGGCGAAGAGAATGGCAACAATGGCAC
TGTCAAGAAGAGTGCTATTGAGACCCAGAGGGAAATCACTGCTTACTGGA
TGAAATATGTCAGCGAGAGGAAAACTAACAAAAACAAGATATGTTAG
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protein sequence of Tc02v2_p025960.1

>Tc02v2_p025960.1 ID=Tc02v2_p025960.1|Name=Tc02v2_p025960.1|organism=Theobroma cacao|type=polypeptide|length=499bp
MVLSKTASESDVSIHSTFASRYVRASLPRFKMPENSVPKEAAYQIINDEL
MLDGNPRLNLASFVTTWMEPECDKLIMDAINKNYVDMDEYPVTTELQNRC
VNMIAHLFNAPLQDSEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGK
PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPAKAVEMVD
ENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGF
IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSREDLPEEL
IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCHEN
AMVLKEGLEKTGRFNIVSKDHGVPLVAFSLKDNKRHDEFEISDMLRRFGW
IVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDIKKVLHELDTLPAK
VNAKLAMAGEENGNNGTVKKSAIETQREITAYWMKYVSERKTNKNKIC*
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