Tc02v2_t025800.1

Overview
NameTc02v2_t025800.1
Unique NameTc02v2_t025800.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2211
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productprotein CHROMATIN REMODELING 19, transcript variant X2
NoteProtein CHROMATIN REMODELING 19
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609933
GenbankXM_018116122.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g025800Tc02v2_g025800Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p025800.1Tc02v2_p025800.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto128402auto128402Theobroma cacaoexon
exon-auto128403auto128403Theobroma cacaoexon
exon-auto128404auto128404Theobroma cacaoexon
exon-auto128405auto128405Theobroma cacaoexon
exon-auto128406auto128406Theobroma cacaoexon
exon-auto128407auto128407Theobroma cacaoexon
exon-auto128408auto128408Theobroma cacaoexon
exon-auto128409auto128409Theobroma cacaoexon
exon-auto128410auto128410Theobroma cacaoexon
exon-auto128411auto128411Theobroma cacaoexon
exon-auto128412auto128412Theobroma cacaoexon
exon-auto128413auto128413Theobroma cacaoexon
exon-auto128414auto128414Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto128415auto128415Theobroma cacaoCDS
CDS-auto128416auto128416Theobroma cacaoCDS
CDS-auto128417auto128417Theobroma cacaoCDS
CDS-auto128418auto128418Theobroma cacaoCDS
CDS-auto128419auto128419Theobroma cacaoCDS
CDS-auto128420auto128420Theobroma cacaoCDS
CDS-auto128421auto128421Theobroma cacaoCDS
CDS-auto128422auto128422Theobroma cacaoCDS
CDS-auto128423auto128423Theobroma cacaoCDS
CDS-auto128424auto128424Theobroma cacaoCDS
CDS-auto128425auto128425Theobroma cacaoCDS
CDS-auto128426auto128426Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t025800.1 ID=Tc02v2_t025800.1|Name=Tc02v2_t025800.1|organism=Theobroma cacao|type=mRNA|length=2211bp
ATGATACCAAAAAAAAATCTTAAAATGAAGCGCGTTTTTGACGAAGTCTC
AGACGAAGAATGGGAGAACCACTCTTTCAAGCCTTCTCGTGTTTTAAGGA
AAAACCCTAGCCCTCCTCCAATTGAATCTTTCGCCTTCAATTCCCGTACG
GATTCTAGTTTTTCCGACCAAAGCAGCGACGATTGCGTCGAAGTCGAACA
ATTGGAGGACGACGATGTTGAGCCCGAGGACGCCGGGCGGGTCAATCGTG
CCCGTCGATTCGTGATTGACGACGACGACGAAGAAGAAGAAGATTACGGA
AAGGACGGCGATGAAAATGGTTGTGAGGAGGTGTATGATGTTGAGTCGAG
TGAAGAGGAGGAATTACAAGAGGATGACGTGGTAGGAAAAGCGTTGCAGA
AGTGCTCTAAAATATCGGCGGAGCTTCGGAAGGAGCTCTACGGGAGTTCC
GGTGCTTCTTGTGAACGATACGCCGAAGTAGAAGCTTCTTCTGTGAGAAT
CGTTACACAGAATGATATTGATATAGCTTGTGGGGCAGTCGATTCGGATT
TTCAGCCAGTTCTCAAGCCATACCAACTGGTCGGTGTAAACTTTCTTCTT
CTGTTGCATCGCAAGGGTATTGGAGGAGCTATTTTGGCAGATGAAATGGG
TCTTGGGAAAACCATTCAGGCTATTACATATCTAACTTTGCTGAAACATT
TGAATAATGATCCTGGTCCCCATTTAATAGTTTGTCCTGCCTCAGTCTTG
GAAAACTGGGAAAGAGAACTTAAGAAGTGGTGTCCATCATTTTCTGTACT
TCAGTATCATGGTGCTGGCCGAGCAGCTTACTCAAAAGAGTTGAGCTATT
TGTCCAAAGCTGGATTACCACCTCCATTTAATGTTCTTCTGGTGTGTTAT
TCACTTTTTGAACGACACAGTGTGCAGCAGAAGGATGATCGTAAAATTCT
GAAACGTTGGCGTTGGAGCTGTGTGCTAATGGATGAGGCCCATGCTTTGA
AGGACAAAAACAGCTATAGGTGGAAAAATCTAATGTCAGTTGCTCGAAAT
GCAAACCAGCGTCTTATGCTAACAGGCACACCACTGCAAAATGATTTACA
TGAGCTGTGGTCATTGTTAGAGTTCATGATGCCTGATCTTTTTGCCACTG
AGGATGTAGACTTGAAGAAGCTGCTAAATGCGGACGATAGGGAGTTGATT
GGTCGTATGAAGTCCATGTTGGGACCATTCATCTTGAGGCGTTTGAAATC
AGATGTGATGCAGCAACTTGTCCCAAAGATACAACGGGTTGAGTATGTGA
CTATGGAAAAGCAACAAGAAGATGCTTATAGGGAATCCATAGAGGAGTAT
CGTACAATTTCACGAGCACGCATTGCAAAGCTTTCAGAGTCTGACTTGAA
TAATATTGTTGGAATTCTTCCTCGACGTCAGATCTCAAACTATTTTATTC
AGTTTCGCAAGATTGCAAATCATCCATTATTGGTGAGGCGAATTTATGAT
GATGAGGATGTTGTTCGCTTTGCTAAAAGGTTACATTCAATGGGTGTTTT
CGAATGTACCTTGGACAGAGTAATTGAGGAACTAAAGAATTACAATGACT
TCTCTATTCATCGGCTTTTACTTCATTATGGAATTACTGGTGGTAAACAA
ACTCTTTCGGATGAACATGTTATGCTTTCAGCTAAATGCCAGGCATTAGC
AGAGCTTCTCCCTTCACTCAAGAAAAGTGGGCATCGGGTTCTGATTTTTA
GCCAGTGGACTTCGATGCTTGATATCTTAGAGTGGACTTTAGATGTCATT
GGGGTTACGTATAGACGGCTTGATGGAAGTACTCAGGTGACTGATAGGCA
GACCATAGTCGATAATTTCAATAATGACACTTCTATATTTGCATGCTTGT
TGTCTACAAGAGCTGGAGGGCAGGGTTTGAACTTGACAGGAGCTGATACT
GTAGTTATTCATGACATGGATTTTAATCCACAGATTGACAGACAGGCTGA
AGATCGCTGCCATCGCATTGGCCAAACGAGGCCTGTTACCATATACAGGC
TGGTTACGAAAGGGACAGTTGATGAGAATGTTTATGAGATTGCAAAAAGG
AAGTTGACTCTGGATGCTGCAGTGCTAGAGTCTGGAATGGATGTAGACAA
CGACAGTGATACAGGCGAAAAAACAATGGGACAGATACTGTCATCCCTAC
TGATGAGCTAG
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protein sequence of Tc02v2_p025800.1

>Tc02v2_p025800.1 ID=Tc02v2_p025800.1|Name=Tc02v2_p025800.1|organism=Theobroma cacao|type=polypeptide|length=737bp
MIPKKNLKMKRVFDEVSDEEWENHSFKPSRVLRKNPSPPPIESFAFNSRT
DSSFSDQSSDDCVEVEQLEDDDVEPEDAGRVNRARRFVIDDDDEEEEDYG
KDGDENGCEEVYDVESSEEEELQEDDVVGKALQKCSKISAELRKELYGSS
GASCERYAEVEASSVRIVTQNDIDIACGAVDSDFQPVLKPYQLVGVNFLL
LLHRKGIGGAILADEMGLGKTIQAITYLTLLKHLNNDPGPHLIVCPASVL
ENWERELKKWCPSFSVLQYHGAGRAAYSKELSYLSKAGLPPPFNVLLVCY
SLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARN
ANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNADDRELI
GRMKSMLGPFILRRLKSDVMQQLVPKIQRVEYVTMEKQQEDAYRESIEEY
RTISRARIAKLSESDLNNIVGILPRRQISNYFIQFRKIANHPLLVRRIYD
DEDVVRFAKRLHSMGVFECTLDRVIEELKNYNDFSIHRLLLHYGITGGKQ
TLSDEHVMLSAKCQALAELLPSLKKSGHRVLIFSQWTSMLDILEWTLDVI
GVTYRRLDGSTQVTDRQTIVDNFNNDTSIFACLLSTRAGGQGLNLTGADT
VVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRLVTKGTVDENVYEIAKR
KLTLDAAVLESGMDVDNDSDTGEKTMGQILSSLLMS*
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