Tc02v2_t025550.1

Overview
NameTc02v2_t025550.1
Unique NameTc02v2_t025550.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length957
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Producturacil-DNA glycosylase, mitochondrial, transcript variant X1
NoteUracil-DNA glycosylase, mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18609902
GenbankXM_018114591.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc02v2_g025550Tc02v2_g025550Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc02v2_p025550.1Tc02v2_p025550.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto127741auto127741Theobroma cacaoexon
exon-auto127742auto127742Theobroma cacaoexon
exon-auto127743auto127743Theobroma cacaoexon
exon-auto127744auto127744Theobroma cacaoexon
exon-auto127745auto127745Theobroma cacaoexon
exon-auto127746auto127746Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto127747auto127747Theobroma cacaoCDS
CDS-auto127748auto127748Theobroma cacaoCDS
CDS-auto127749auto127749Theobroma cacaoCDS
CDS-auto127750auto127750Theobroma cacaoCDS
CDS-auto127751auto127751Theobroma cacaoCDS
CDS-auto127752auto127752Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc02v2_t025550.1 ID=Tc02v2_t025550.1|Name=Tc02v2_t025550.1|organism=Theobroma cacao|type=mRNA|length=957bp
ATGCTCCTTCGTGTGTGTTCCTCGCCGTGTTCCCTACAGGCCAGAGCAAT
GGCCGCCTCCTCGAAAACCATAACCGATTTCTTCCAAGCAAACCCAGGCC
CAGCCAAGCGTCAGAAACTCTCCACTCCTTCCGATGATCACCAACCTTTT
CCTTCTCTCACCGCCGAGCAAAAATCTCGCATGGAATTTAACAAATGTGT
CGCCAAATCAAAACGCAACCTCAAAATCTGTTCCCAGAAGGTGTCGCAGT
CCAAGGTTGAAGGATCGGGTTTCGTCAAACTGGAGGAACTCTTGGTGGAG
GACACGTGGCTCGAGGCCCTACCCGGGGAGCTTCAGAAGCCTTACGCTAA
TAACTTGTGCAAAATTGTTGAGAGCGAGATATCCAGTGGCAGCGTGCCCA
TTTATCCTCCCCAGCACTTGATTTTCAATGCCCTTAATTCTACTCCATTT
CACAGGGTCAAAGCAGTTATTATTGGACAGGACCCTTATCATGGACCTGG
TCAAGCAATGGGGCTTTCATTTTCTGTGCCAGAGGGAGTGAAGGTTCCCT
CAAGTCTGGTGAATATATTTAAGGAACTTAAGCAAGATCTTGGCTGTTCG
ATTCCGTCCCATGGAAATCTAGAGAAATGGGCTGTTCAGGGTGTTCTTTT
GCTCAATACTGTTCTCACAGTTAGGAAGCACCAAGCTAATTCTCATGCCA
AGAAAGGATGGGAGCAATTTACTGATGCTATTATTAGAACTATCTCACAA
AAGAAGGAAGGAGTTATTTTCCTCCTCTGGGGGAACTCAGCTCAAGAGAA
ATCCAGGTTGATTGATCAGAAAAAGCATCACATTCTCAAAGCAGCGCATC
CTTCTGGTTTATCTGCAAATAGAGGCTTCTTTGGTTGCAGGCATTTCTCT
CGCACAAACCAGCTTTTGGAGCAAATGGGGATGCCCCCGATAGATTGGCA
ACTTTGA
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protein sequence of Tc02v2_p025550.1

>Tc02v2_p025550.1 ID=Tc02v2_p025550.1|Name=Tc02v2_p025550.1|organism=Theobroma cacao|type=polypeptide|length=319bp
MLLRVCSSPCSLQARAMAASSKTITDFFQANPGPAKRQKLSTPSDDHQPF
PSLTAEQKSRMEFNKCVAKSKRNLKICSQKVSQSKVEGSGFVKLEELLVE
DTWLEALPGELQKPYANNLCKIVESEISSGSVPIYPPQHLIFNALNSTPF
HRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKVPSSLVNIFKELKQDLGCS
IPSHGNLEKWAVQGVLLLNTVLTVRKHQANSHAKKGWEQFTDAIIRTISQ
KKEGVIFLLWGNSAQEKSRLIDQKKHHILKAAHPSGLSANRGFFGCRHFS
RTNQLLEQMGMPPIDWQL*
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